View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12532_high_8 (Length: 376)
Name: NF12532_high_8
Description: NF12532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12532_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 46686952 - 46686607
Alignment:
| Q |
18 |
aaaagaaatttgtttatctttcgttttcttatactaatctttttaattaacaattttatcactcaattttctcgaaatgttcttattttgagatctatca |
117 |
Q |
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| T |
46686952 |
aaaagaaatctgtttatctttcgttttcttatactaatctttttaattaacaattttatcactcaattttctcgaaatgttcttattttgagatctatc- |
46686854 |
T |
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| Q |
118 |
tccaactcatttaaaaattcggtttgttttgttctgtttaatttggnnnnnnnnactcttcaaaggaacatccaaaaagtttacacgtgtttttagtgat |
217 |
Q |
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| T |
46686853 |
--caactcatttaaaaattcggtttgttttgttctgtttaatttggttttttttactcttcaaaggaacatccaaaaagtttacacgtgtttttagtgat |
46686756 |
T |
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| Q |
218 |
cctataaagtttgactttgttttccttgtatgggaaacaaccaagaagttggtggtgttttaatgatggctatgagtttgtaacgaaagaaatttgatgt |
317 |
Q |
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| T |
46686755 |
cctataaagtttgactttgttttccttgtatgggaaacaaccaagaagttggtggtgttttaatgatggctatgagtttgtaacgaaagaaatttgatgt |
46686656 |
T |
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| Q |
318 |
tggattctcaactgaaattcctaaattacccgttttgttcttgcctttg |
366 |
Q |
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| T |
46686655 |
tggattctcaactgaaattcctaaattacccgttttgttcttgcctttg |
46686607 |
T |
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