View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12532_low_1 (Length: 904)
Name: NF12532_low_1
Description: NF12532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12532_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 756; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 756; E-Value: 0
Query Start/End: Original strand, 19 - 894
Target Start/End: Original strand, 40225842 - 40226726
Alignment:
| Q |
19 |
ttagagtggtgcaagaaactcaaaatcataacctctgcaagaaattccctgcttccttgaaatccatccttgttaagtttctttacagcaacaacctgca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40225842 |
ttagagtggtgcaagaaactcaaaatcataacctctgcaagaaattccctgcttccttgaaatccatccttgttaagtttcttaacagcaacaacctgca |
40225941 |
T |
|
| Q |
119 |
tatagtataagtaacacaacattgataagttcacttactatatgcgttttaaaaattgaacaaggcggtttaaccggttgaaccttgaattggcacttcg |
218 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
40225942 |
tatagtataagtaacacaacattgacaagttcgcttactatatgcgttttaaaaattgaacaagacggtttaaccggttgaaccttgaattggcactttg |
40226041 |
T |
|
| Q |
219 |
atcaaggttttatccccattcaaacc-----gtttaagacggttgaaatatgatccagaggtcttgccggtttgatgttcaattgggttcaatatttaaa |
313 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||| |
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| T |
40226042 |
atcaaagttttatccccattcaaaccaaaccgtttaagacggttgaaatatgatccagaagtcttgccggtttgatgttcaatttggttcaatttttaaa |
40226141 |
T |
|
| Q |
314 |
acattgcttacaaattgaataacttt--tagcataatattcaaataactcctagtaaaagtaatattataccttattatttatgcttttaatgcgccctt |
411 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40226142 |
acattgcttacaaattgaataactttgttagcataatattcaaataactcctagcataagtaatattataccttattatttatgcttttaatgcgccctt |
40226241 |
T |
|
| Q |
412 |
tgtatactctcccaaagccgccttcaccaatcatattgttgatatgaaaattcttagttgcaacacatagctcatggtaagaaaatatcttagaggtaat |
511 |
Q |
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| T |
40226242 |
tgtatactctcccaaagcctccttcaccaatcatattgttgatatgaaaattcttagttgcaacacatagctcatggtaagaaaatatcttagaggtaat |
40226341 |
T |
|
| Q |
512 |
atttccttttccatttcttgtgttttcttcctctgctatgtacttccgtttgccaccatctacaatataaatttttacaattaaagaaaacaacattgat |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40226342 |
atttccttttccatttcttgtgttttcttcctctgctatgtacttccgtttgccaccatctacaatataaatttttacaattaaagaaaacaacattgat |
40226441 |
T |
|
| Q |
612 |
gtgctaacatttcataaagaaaacaacaataatctctagacatgagacattaaattgaacctctttaacatgaaaatcaataccctttgcnnnnnnnnnt |
711 |
Q |
| |
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| T |
40226442 |
gtgctaacatttcataaagaaaacaacaataatatctagacatgagacattaaattgaacctctttaacatgaaaatcaataccctttgcaaaaaaaaat |
40226541 |
T |
|
| Q |
712 |
--gaaaatgaatacaatatttgatgtgaaaccagaaattcagaaccttgcaattgaaaaaagtaattaaataattgggacaatgtggaagattaacattg |
809 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40226542 |
aaaaaaatgaatacaatatttgatgtgaaaccagaaattcagaaccttgcaattgaaaaaagtaattaaataattgggacaatgtggaagattaacattg |
40226641 |
T |
|
| Q |
810 |
aagggtaaaaaatttaccagatttagaacaaatgttatgatagtccttaatgcttttcttcaatgtgttcttggtgttcttctct |
894 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40226642 |
aagggtaaaaaacttaccagatttagaacaaatgttatgatagtccttaatgcttttcttcaatgtgttcttggtgttcttctct |
40226726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 19994761 - 19994854
Alignment:
| Q |
25 |
tggtgcaagaaactcaaaatcataacctctgcaagaaattccctgcttccttgaaatccatccttgttaagtttctttacagcaacaacctgca |
118 |
Q |
| |
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|||||||| | ||||||||||| ||||||| |||| ||||| ||| | ||||||||||||| ||| |||| ||| |||||||||| ||||| |
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| T |
19994761 |
tggtgcaaaagactcaaaatcaaaacctctacaaggaattctctgttcccttgaaatccatttctgtcaagtgccttcacagcaacaatctgca |
19994854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 19998995 - 19999044
Alignment:
| Q |
36 |
actcaaaatcataacctctgcaagaaattccctgcttccttgaaatccat |
85 |
Q |
| |
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||||||||||| ||||||| ||||||| |||||| | ||||||||||||| |
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| T |
19998995 |
actcaaaatcaaaacctctacaagaaactccctgttcccttgaaatccat |
19999044 |
T |
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