View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12532_low_10 (Length: 397)
Name: NF12532_low_10
Description: NF12532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12532_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 45185905 - 45186255
Alignment:
| Q |
18 |
agtggcagcacgtaacccaaatgaccaatttgtccctccacggttccggaaagaggaaaccgcggaaacgagcttagaacgtaagatctgaaacccaatg |
117 |
Q |
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| T |
45185905 |
agtggcagcacgtaacccaaatgaccaatttgtccctccacggttccggaaagaggaaaccgcggaaacgagcttagaacgtaagatctgaaacccaatg |
45186004 |
T |
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| Q |
118 |
ctcaaccacccgataaagtcacaacctttacggagacttgaatcgaacggtgaagacagagataaacattcttcccaagcgtcacaatcagaaggggaaa |
217 |
Q |
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| T |
45186005 |
ctcaaccacccgataaagtcacaacctttacggagacttgaatcgaacggtgaagacagagataaacattcttcccaagcgtcacaatcagaaggggaaa |
45186104 |
T |
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| Q |
218 |
aagatggagatgaagaagaaggagatgggggtgatttcgattgtggaatttgttgatttgtgaagagttgaagattttcgtggttaattggagggaatat |
317 |
Q |
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| T |
45186105 |
aagat---------------ggagatgggggtgatttcgattgtggaatttgttgatttgtcaagagttgaagattttcgtggttaattggagggaatat |
45186189 |
T |
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| Q |
318 |
tgaaaattcgtctttgttatcggtgataattaccattggaaattcgttttgattggcattcacagg |
383 |
Q |
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| T |
45186190 |
tgaaaattcgtctttgttatcggtgataattaccattggaaattcgttttgattggcattcacagg |
45186255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 45188188 - 45188225
Alignment:
| Q |
259 |
tgtggaatttgttgatttgtgaagagttgaagattttc |
296 |
Q |
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| T |
45188188 |
tgtggaatttggtgatttgtgaagagatgaagattttc |
45188225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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