View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12532_low_12 (Length: 359)
Name: NF12532_low_12
Description: NF12532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12532_low_12 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 1481373 - 1481714
Alignment:
| Q |
18 |
aaacatgtattagcaaaaatagaaaagaaatggtaatcatgtaactatatcatctattctttttgtttttaaatgttgttggatgcatattaggataatt |
117 |
Q |
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| T |
1481373 |
aaacatgtattagcaaaaaaagaaaagaaatggtaatcatgtaacaatatcatctattctttttgtttttaaatgttgttggatgcatattaggataatt |
1481472 |
T |
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| Q |
118 |
ttaatcataatattctatacttattaagtttgtttgtgattttcaaatagacccgcgtcgcacgggtcaaatcttagtaattgattggtttatagcacaa |
217 |
Q |
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| T |
1481473 |
ttaatcataatattctatacttattaagtttgtttgtgattttcaaatagacccgcgtcgcacgggtcaaatcttagtaattgattggtttatagcacaa |
1481572 |
T |
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| Q |
218 |
gggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcactgaaacaagtatagtgagcgc |
317 |
Q |
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| T |
1481573 |
gggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcactgaaacaagtatagtgagcgc |
1481672 |
T |
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| Q |
318 |
aaccctctttgcatgctgccatgtttatggctacagtttcag |
359 |
Q |
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| T |
1481673 |
aaccctctttgcatgctgccatgtttatggctacattttcag |
1481714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 207 - 359
Target Start/End: Original strand, 49190892 - 49191044
Alignment:
| Q |
207 |
ttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcactgaaacaagt |
306 |
Q |
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| T |
49190892 |
ttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagctgctatgtcacttggactcactgaagcaagt |
49190991 |
T |
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| Q |
307 |
atagtgagcgcaaccctctttgcatgctgccatgtttatggctacagtttcag |
359 |
Q |
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| T |
49190992 |
atagtgagcgcaaccctctttgcatgccgccatgtttatggctacattttcag |
49191044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 1850638 - 1850550
Alignment:
| Q |
72 |
tattctttttgtttttaaatgttgttggatgcatattaggataattttaatcataatattctatacttattaagtttgtttgtgatttt |
160 |
Q |
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| T |
1850638 |
tattcttttttattttaaatgttgttgaatgcatattaagataattttaataataatattgtatacttattaagtttgtttgtgatttt |
1850550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 249
Target Start/End: Complemental strand, 30475886 - 30475857
Alignment:
| Q |
220 |
gtttcaaatgaattaggagctggtaatcca |
249 |
Q |
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| T |
30475886 |
gtttcaaatgaattaggagctggtaatcca |
30475857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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