View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12532_low_16 (Length: 289)
Name: NF12532_low_16
Description: NF12532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12532_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 1481551 - 1481808
Alignment:
| Q |
19 |
aattgattggtttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactca |
118 |
Q |
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| T |
1481551 |
aattgattggtttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactca |
1481650 |
T |
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| Q |
119 |
ctgaaacaagtatagtgagcgcaaccctctttgcatgctgccatgtttatggctacagtttcagtagtgatacggaggttgttaaatacgttactgtctt |
218 |
Q |
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| T |
1481651 |
ctgaaacaagtatagtgagcgcaaccctctttgcatgctgccatgtttatggctacattttcagtagtgatacggaggttgttaaatacgttactgtctt |
1481750 |
T |
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| Q |
219 |
ggctcttctggtttctatatctgttatactcgatagcatacaaggcgttttcacaggt |
276 |
Q |
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| T |
1481751 |
ggctcttctggtttctatatctgttatactcgatagcatacaaggcgttttcacaggt |
1481808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 30 - 276
Target Start/End: Original strand, 49190892 - 49191138
Alignment:
| Q |
30 |
ttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcactgaaacaagt |
129 |
Q |
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| T |
49190892 |
ttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagctgctatgtcacttggactcactgaagcaagt |
49190991 |
T |
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| Q |
130 |
atagtgagcgcaaccctctttgcatgctgccatgtttatggctacagtttcagtagtgatacggaggttgttaaatacgttactgtcttggctcttctgg |
229 |
Q |
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| T |
49190992 |
atagtgagcgcaaccctctttgcatgccgccatgtttatggctacattttcagtagtgatacagaagttgttaaatacgtcactgtcttggctcctctgg |
49191091 |
T |
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| Q |
230 |
tttctatatctgttatactcgatagcatacaaggcgttttcacaggt |
276 |
Q |
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| T |
49191092 |
tttctatatccgttatactcgacagcatacaaggcgttctcgcaggt |
49191138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 30475886 - 30475857
Alignment:
| Q |
43 |
gtttcaaatgaattaggagctggtaatcca |
72 |
Q |
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| T |
30475886 |
gtttcaaatgaattaggagctggtaatcca |
30475857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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