View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12532_low_4 (Length: 600)

Name: NF12532_low_4
Description: NF12532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12532_low_4
NF12532_low_4
[»] chr5 (13 HSPs)
chr5 (13-578)||(38069236-38069801)
chr5 (257-344)||(30588931-30589018)
chr5 (340-394)||(32337539-32337593)
chr5 (340-377)||(40261055-40261092)
chr5 (291-334)||(5308280-5308323)
chr5 (354-387)||(22198992-22199025)
chr5 (350-387)||(31973137-31973174)
chr5 (346-382)||(7095908-7095944)
chr5 (344-392)||(15844506-15844554)
chr5 (350-394)||(30366685-30366729)
chr5 (350-386)||(32661593-32661629)
chr5 (350-406)||(35661035-35661090)
chr5 (350-378)||(43433697-43433725)
[»] chr2 (7 HSPs)
chr2 (348-394)||(3008432-3008478)
chr2 (348-408)||(33456020-33456080)
chr2 (350-393)||(5511789-5511832)
chr2 (340-387)||(7252251-7252298)
chr2 (412-463)||(41083085-41083136)
chr2 (341-378)||(11064484-11064521)
chr2 (347-387)||(43481361-43481401)
[»] chr7 (7 HSPs)
chr7 (351-387)||(39164707-39164743)
chr7 (344-386)||(21048690-21048732)
chr7 (342-394)||(27820919-27820972)
chr7 (340-394)||(39079918-39079972)
chr7 (350-383)||(1920243-1920276)
chr7 (257-334)||(47856159-47856236)
chr7 (350-394)||(38963370-38963414)
[»] chr8 (7 HSPs)
chr8 (339-394)||(30590521-30590576)
chr8 (342-408)||(38475771-38475838)
chr8 (356-407)||(45031160-45031211)
chr8 (348-394)||(30966067-30966113)
chr8 (356-462)||(45031369-45031475)
chr8 (354-394)||(25930301-25930341)
chr8 (350-394)||(26642660-26642704)
[»] chr4 (9 HSPs)
chr4 (348-387)||(50830702-50830741)
chr4 (342-394)||(17912814-17912866)
chr4 (342-386)||(31965067-31965111)
chr4 (340-387)||(24001542-24001589)
chr4 (350-381)||(30490941-30490972)
chr4 (340-386)||(31901201-31901247)
chr4 (353-394)||(3137470-3137511)
chr4 (134-163)||(37824194-37824223)
chr4 (360-408)||(35819140-35819188)
[»] chr1 (10 HSPs)
chr1 (340-387)||(347123-347170)
chr1 (350-386)||(17557710-17557746)
chr1 (340-375)||(11584360-11584395)
chr1 (340-387)||(17558218-17558265)
chr1 (340-394)||(41590517-41590570)
chr1 (357-394)||(10239504-10239541)
chr1 (354-387)||(21641411-21641444)
chr1 (342-378)||(31626233-31626269)
chr1 (350-405)||(36470526-36470582)
chr1 (339-387)||(40571607-40571654)
[»] chr3 (8 HSPs)
chr3 (350-387)||(43955326-43955363)
chr3 (340-376)||(10485124-10485160)
chr3 (350-381)||(39225012-39225043)
chr3 (121-163)||(10485406-10485448)
chr3 (342-387)||(10450148-10450193)
chr3 (339-407)||(13574911-13574980)
chr3 (350-387)||(31151832-31151869)
chr3 (345-381)||(50187399-50187435)
[»] chr6 (4 HSPs)
chr6 (121-162)||(19385726-19385767)
chr6 (350-387)||(26400805-26400842)
chr6 (350-394)||(9592385-9592429)
chr6 (208-244)||(19385611-19385647)


Alignment Details
Target: chr5 (Bit Score: 550; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 13 - 578
Target Start/End: Original strand, 38069236 - 38069801
Alignment:
Q  13 cacagacatatacgattatatgaggaaagataccacaattgaagtaagagcaagcaaaggtacaagtgtagaacaaaaatttgaagtcaaagtattagtt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38069236 cacagacatatacgattatatgaggaaagataccacaattgaagtaagagcaagcaaaggtacaagtgtagaacaaaaatttgaagtcaaagtattagtt 38069335  T
Q  113 ttgttaggagtctcacattgcatgagatatggtctaaaaatgtgtttataatcctcaccttacaagccggttccgtaagaaatgtggcaagttcaaccca 212  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38069336 ttgttaggagtctcgcattgcatgagatatggtctaaaaatgtgtttataatcctcaccttacaagccggttccgtaagaaatgtggcaagttcaaccca 38069435  T
Q  213 aattctaaaatggtatcaaagcctatcaaagaccatttcacattcaatgtgggacactaaacacatccctctcacgcccaagactggacatctggagcgt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38069436 aattctaaaatggtatcaaagcctatcaaagaccatttcacattcaatgtgggacactaaacacatccctctcacgcccaagactggacatctggagcat 38069535  T
Q  313 gacatgagtggcccgatagcggaaacttgataccatattagaatttgggttgggcctaactcaaccttataaaacaggcttgcgaggcgaggattgtcac 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38069536 gacatgagtggcccgatagcggaaacttgataccatattagaatttgggttgggcctaactcaaccttataaaacaggcttgcgaggcgaggattgtcac 38069635  T
Q  413 aacctataaatatttgttcagaccatttcactttcaatgtgggactcttaataggtcactctgatcgagtcacttgcaatctaaccacttaagtgacact 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  38069636 aacctataaatatttgttcagaccatttcactttcaatgtgggactcttaataggtcactctgatcgagtcacttgctatctaaccactcaagtgacact 38069735  T
Q  513 ctagatgttcaattctgagttgagttaggtgcaacccaaattctaagaaatttagcactgaatttg 578  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38069736 ctagatgttcaattctgagttgagttaggtgcaacccaaattctaagaaatttagcactgaatttg 38069801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 344
Target Start/End: Original strand, 30588931 - 30589018
Alignment:
Q  257 caatgtgggacactaaacacatccctctcacgcccaagactggacatctggagcgtgacatgagtggcccgatagcggaaacttgata 344  Q
    ||||||||||| || ||||||  || |||||||| |  ||| |||||||||||||||||  |||||| ||||||||||||||||||||    
T  30588931 caatgtgggactcttaacacacacccctcacgcctagaactagacatctggagcgtgacccgagtggtccgatagcggaaacttgata 30589018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 32337593 - 32337539
Alignment:
Q  340 tgataccatattagaatttgggttgggcctaactcaaccttataaaacaggcttg 394  Q
    ||||||||||||||||||||||||||||||||  ||||| || ||||| ||||||    
T  32337593 tgataccatattagaatttgggttgggcctaatacaaccctacaaaaccggcttg 32337539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 340 - 377
Target Start/End: Original strand, 40261055 - 40261092
Alignment:
Q  340 tgataccatattagaatttgggttgggcctaactcaac 377  Q
    |||||||||||||||||||||||||||||||| |||||    
T  40261055 tgataccatattagaatttgggttgggcctaattcaac 40261092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 5308280 - 5308323
Alignment:
Q  291 caagactggacatctggagcgtgacatgagtggcccgatagcgg 334  Q
    |||||||| |||||||||||| ||| ||||||||||||||||||    
T  5308280 caagactgaacatctggagcgggacctgagtggcccgatagcgg 5308323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 387
Target Start/End: Original strand, 22198992 - 22199025
Alignment:
Q  354 aatttgggttgggcctaactcaaccttataaaac 387  Q
    |||||||||||||||||||||||||||| |||||    
T  22198992 aatttgggttgggcctaactcaaccttacaaaac 22199025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 31973137 - 31973174
Alignment:
Q  350 ttagaatttgggttgggcctaactcaaccttataaaac 387  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  31973137 ttagaatttgggttgggcctaactgaaccttacaaaac 31973174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 382
Target Start/End: Complemental strand, 7095944 - 7095908
Alignment:
Q  346 catattagaatttgggttgggcctaactcaaccttat 382  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  7095944 catattagaattttggttggacctaactcaaccttat 7095908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 344 - 392
Target Start/End: Original strand, 15844506 - 15844554
Alignment:
Q  344 accatattagaatttgggttgggcctaactcaaccttataaaacaggct 392  Q
    ||||| ||| ||||||||||||||||||||||| |||| ||||| ||||    
T  15844506 accatcttaaaatttgggttgggcctaactcaatcttacaaaactggct 15844554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 394
Target Start/End: Complemental strand, 30366729 - 30366685
Alignment:
Q  350 ttagaatttgggttgggcctaactcaaccttataaaacaggcttg 394  Q
    ||||||||||| |||||||||||||||||||| ||| | ||||||    
T  30366729 ttagaatttggtttgggcctaactcaaccttacaaagccggcttg 30366685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 32661629 - 32661593
Alignment:
Q  350 ttagaatttgggttgggcctaactcaaccttataaaa 386  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  32661629 ttagaatttgggttgggcctaactcaatcttacaaaa 32661593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 406
Target Start/End: Complemental strand, 35661090 - 35661035
Alignment:
Q  350 ttagaatttgggttgggcctaactcaaccttataaaacaggcttgcgaggcgaggat 406  Q
    ||||||||| |||||||||||| ||||||||| ||||| ||||||  ||||||||||    
T  35661090 ttagaattttggttgggcctaattcaaccttacaaaac-ggcttgtaaggcgaggat 35661035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 378
Target Start/End: Original strand, 43433697 - 43433725
Alignment:
Q  350 ttagaatttgggttgggcctaactcaacc 378  Q
    |||||||||||||||||||||||||||||    
T  43433697 ttagaatttgggttgggcctaactcaacc 43433725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 348 - 394
Target Start/End: Complemental strand, 3008478 - 3008432
Alignment:
Q  348 tattagaatttgggttgggcctaactcaaccttataaaacaggcttg 394  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||    
T  3008478 tattagaatttgggttgggcctaactcaaccttacaaaactggcttg 3008432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 408
Target Start/End: Complemental strand, 33456080 - 33456020
Alignment:
Q  348 tattagaatttgggttgggcctaactcaaccttataaaacaggcttgcgaggcgaggattg 408  Q
    |||||||||||||||||||||||||||||||||| ||||| || |||  ||| ||||||||    
T  33456080 tattagaatttgggttgggcctaactcaaccttacaaaaccggtttgtaaggtgaggattg 33456020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 350 - 393
Target Start/End: Original strand, 5511789 - 5511832
Alignment:
Q  350 ttagaatttgggttgggcctaactcaaccttataaaacaggctt 393  Q
    ||||||||||||||||||||||||||||||| |||||| |||||    
T  5511789 ttagaatttgggttgggcctaactcaaccttctaaaaccggctt 5511832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 387
Target Start/End: Complemental strand, 7252298 - 7252251
Alignment:
Q  340 tgataccatattagaatttgggttgggcctaactcaaccttataaaac 387  Q
    ||||||||| ||||||||||||||| ||||||||||||| || |||||    
T  7252298 tgataccatcttagaatttgggttgagcctaactcaaccctacaaaac 7252251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 463
Target Start/End: Complemental strand, 41083136 - 41083085
Alignment:
Q  412 caacctataaatatttgttcagaccatttcactttcaatgtgggactcttaa 463  Q
    ||||||||||| ||||||||||||||| ||||| ||| |||| |||||||||    
T  41083136 caacctataaacatttgttcagaccatatcactatcagtgtgagactcttaa 41083085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 11064484 - 11064521
Alignment:
Q  341 gataccatattagaatttgggttgggcctaactcaacc 378  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  11064484 gataccatattagaatttgggttgcacctaactcaacc 11064521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 387
Target Start/End: Original strand, 43481361 - 43481401
Alignment:
Q  347 atattagaatttgggttgggcctaactcaaccttataaaac 387  Q
    |||||| ||||||||||| | ||||||||||||||||||||    
T  43481361 atattaaaatttgggttgagtctaactcaaccttataaaac 43481401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 387
Target Start/End: Complemental strand, 39164743 - 39164707
Alignment:
Q  351 tagaatttgggttgggcctaactcaaccttataaaac 387  Q
    |||||||||||||||||||||||||||||||||||||    
T  39164743 tagaatttgggttgggcctaactcaaccttataaaac 39164707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 21048690 - 21048732
Alignment:
Q  344 accatattagaatttgggttgggcctaactcaaccttataaaa 386  Q
    ||||| ||||||||||||||| |||||||||||||||||||||    
T  21048690 accatcttagaatttgggttgagcctaactcaaccttataaaa 21048732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 342 - 394
Target Start/End: Complemental strand, 27820972 - 27820919
Alignment:
Q  342 ataccatattagaattt-gggttgggcctaactcaaccttataaaacaggcttg 394  Q
    ||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||    
T  27820972 ataccatattagaattttgggttcggcctaactcaaccttacaaaactggcttg 27820919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 394
Target Start/End: Original strand, 39079918 - 39079972
Alignment:
Q  340 tgataccatattagaatttgggttgggcctaactcaaccttataaaacaggcttg 394  Q
    |||| |||| ||| |||||||||||||||||||| ||||||| ||||| ||||||    
T  39079918 tgatgccatcttaaaatttgggttgggcctaactaaaccttacaaaaccggcttg 39079972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Complemental strand, 1920276 - 1920243
Alignment:
Q  350 ttagaatttgggttgggcctaactcaaccttata 383  Q
    ||||||||| ||||||||||||||||||||||||    
T  1920276 ttagaattttggttgggcctaactcaaccttata 1920243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 334
Target Start/End: Complemental strand, 47856236 - 47856159
Alignment:
Q  257 caatgtgggacactaaacacatccctctcacgcccaagactggacatctggagcgtgacatgagtggcccgatagcgg 334  Q
    |||||| ||||||| | |||| ||| |||||||||| |||||||||||  ||| |||||   ||||||||||||||||    
T  47856236 caatgtaggacacttagcacagccccctcacgcccaggactggacatcaagagtgtgacccaagtggcccgatagcgg 47856159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 394
Target Start/End: Original strand, 38963370 - 38963414
Alignment:
Q  350 ttagaatttgggttgggcctaactcaaccttataaaacaggcttg 394  Q
    ||||||||||||||| ||||||||||||||||  |||| ||||||    
T  38963370 ttagaatttgggttgagcctaactcaaccttaccaaaccggcttg 38963414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 339 - 394
Target Start/End: Complemental strand, 30590576 - 30590521
Alignment:
Q  339 ttgataccatattagaatttgggttgggcctaactcaaccttataaaacaggcttg 394  Q
    ||||||||||||||||||||||| | ||||||| ||||||||| ||||| ||||||    
T  30590576 ttgataccatattagaatttgggctaggcctaagtcaaccttacaaaaccggcttg 30590521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 408
Target Start/End: Complemental strand, 38475838 - 38475771
Alignment:
Q  342 ataccatattagaatttg-ggttgggcctaactcaaccttataaaacaggcttgcgaggcgaggattg 408  Q
    ||||||| |||||||||| ||||||||||||| ||||| || ||||| |||||| |||| ||||||||    
T  38475838 ataccatcttagaatttgtggttgggcctaacacaaccctacaaaaccggcttgtgaggtgaggattg 38475771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 45031160 - 45031211
Alignment:
Q  356 tttgggttgggcctaactcaaccttataaaacaggcttgcgaggcgaggatt 407  Q
    |||||||||||||||||||||||||| ||||| ||||||  ||| |||||||    
T  45031160 tttgggttgggcctaactcaaccttacaaaaccggcttgaaaggtgaggatt 45031211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 394
Target Start/End: Original strand, 30966067 - 30966113
Alignment:
Q  348 tattagaatttgggttgggcctaactcaaccttataaaacaggcttg 394  Q
    |||||||||||||||||||||||||||||  ||| ||||| ||||||    
T  30966067 tattagaatttgggttgggcctaactcaaatttacaaaaccggcttg 30966113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 356 - 462
Target Start/End: Original strand, 45031369 - 45031475
Alignment:
Q  356 tttgggttgggcctaactcaaccttataaaacaggcttgcgaggcgaggattgtcacaacctataaatatttgttcagaccatttcactttcaatgtggg 455  Q
    ||||||||||||||||| |||||||| ||||| ||||||  ||| |||||||| | | || |||||| || |||||| | ||| || | | ||||| |||    
T  45031369 tttgggttgggcctaacacaaccttacaaaaccggcttgtaaggtgaggattgccccgacttataaacatatgttcatatcatctctcatccaatggggg 45031468  T
Q  456 actctta 462  Q
    |||||||    
T  45031469 actctta 45031475  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 394
Target Start/End: Complemental strand, 25930341 - 25930301
Alignment:
Q  354 aatttgggttgggcctaactcaaccttataaaacaggcttg 394  Q
    ||||||||||||| ||||||| |||||| ||||||||||||    
T  25930341 aatttgggttgggtctaactcgaccttacaaaacaggcttg 25930301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 394
Target Start/End: Complemental strand, 26642704 - 26642660
Alignment:
Q  350 ttagaatttgggttgggcctaactcaaccttataaaacaggcttg 394  Q
    |||||||||||||||||||||| |||||||||  |||| ||||||    
T  26642704 ttagaatttgggttgggcctaaatcaaccttaccaaaccggcttg 26642660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 348 - 387
Target Start/End: Original strand, 50830702 - 50830741
Alignment:
Q  348 tattagaatttgggttgggcctaactcaaccttataaaac 387  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  50830702 tattagaatttgggttgggcctaactcaaccttacaaaac 50830741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 394
Target Start/End: Complemental strand, 17912866 - 17912814
Alignment:
Q  342 ataccatattagaatttgggttgggcctaactcaaccttataaaacaggcttg 394  Q
    ||||||| ||| ||||||||||||||||||||||||| || ||||| ||||||    
T  17912866 ataccatcttaaaatttgggttgggcctaactcaaccctacaaaaccggcttg 17912814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 31965067 - 31965111
Alignment:
Q  342 ataccatattagaatttgggttgggcctaactcaaccttataaaa 386  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||    
T  31965067 ataccatattagaatttgagttgagcctaactcaaccttacaaaa 31965111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 387
Target Start/End: Complemental strand, 24001589 - 24001542
Alignment:
Q  340 tgataccatattagaatttgggttgggcctaactcaaccttataaaac 387  Q
    |||||| || |||||||||||||||||| ||||||||||||| |||||    
T  24001589 tgatactatcttagaatttgggttgggcttaactcaaccttacaaaac 24001542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 381
Target Start/End: Original strand, 30490941 - 30490972
Alignment:
Q  350 ttagaatttgggttgggcctaactcaacctta 381  Q
    ||||||||||||||||||||||||||||||||    
T  30490941 ttagaatttgggttgggcctaactcaacctta 30490972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 386
Target Start/End: Original strand, 31901201 - 31901247
Alignment:
Q  340 tgataccatattagaatttgggttgggcctaactcaaccttataaaa 386  Q
    |||||||||||| ||||||  ||||||||||||||||||||| ||||    
T  31901201 tgataccatattggaatttaagttgggcctaactcaaccttacaaaa 31901247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 394
Target Start/End: Original strand, 3137470 - 3137511
Alignment:
Q  353 gaatttgggttgggcctaactcaaccttataaaacaggcttg 394  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||    
T  3137470 gaatttgggttgggcctaaatcaaccttaaaaaaccggcttg 3137511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 163
Target Start/End: Original strand, 37824194 - 37824223
Alignment:
Q  134 atgagatatggtctaaaaatgtgtttataa 163  Q
    ||||||||||||||||||||||||||||||    
T  37824194 atgagatatggtctaaaaatgtgtttataa 37824223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 360 - 408
Target Start/End: Original strand, 35819140 - 35819188
Alignment:
Q  360 ggttgggcctaactcaaccttataaaacaggcttgcgaggcgaggattg 408  Q
    ||||||||||||| |||||| | ||||| |||||| |||||||||||||    
T  35819140 ggttgggcctaacacaacctcacaaaactggcttgtgaggcgaggattg 35819188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 340 - 387
Target Start/End: Complemental strand, 347170 - 347123
Alignment:
Q  340 tgataccatattagaatttgggttgggcctaactcaaccttataaaac 387  Q
    ||||| |||||||||||||||||||| ||||||||||||||| |||||    
T  347170 tgataacatattagaatttgggttggccctaactcaaccttacaaaac 347123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 17557710 - 17557746
Alignment:
Q  350 ttagaatttgggttgggcctaactcaaccttataaaa 386  Q
    |||||||||||||||||||||||||||||||| ||||    
T  17557710 ttagaatttgggttgggcctaactcaaccttacaaaa 17557746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 375
Target Start/End: Complemental strand, 11584395 - 11584360
Alignment:
Q  340 tgataccatattagaatttgggttgggcctaactca 375  Q
    |||||||||||||||||||||||||| |||||||||    
T  11584395 tgataccatattagaatttgggttggacctaactca 11584360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 387
Target Start/End: Original strand, 17558218 - 17558265
Alignment:
Q  340 tgataccatattagaatttgggttgggcctaactcaaccttataaaac 387  Q
    |||||||| ||| |||| |||||| |||||||||||||||||||||||    
T  17558218 tgataccaaatttgaatgtgggtttggcctaactcaaccttataaaac 17558265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 394
Target Start/End: Original strand, 41590517 - 41590570
Alignment:
Q  340 tgataccatattagaatttgggttgggcctaactcaaccttataaaacaggcttg 394  Q
    ||||||||| |||||||||||||| |||||||||||||||||  |||| ||||||    
T  41590517 tgataccatcttagaatttgggtt-ggcctaactcaaccttacgaaaccggcttg 41590570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Complemental strand, 10239541 - 10239504
Alignment:
Q  357 ttgggttgggcctaactcaaccttataaaacaggcttg 394  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  10239541 ttgggttgggcctaactcaaccttacaaaactggcttg 10239504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 387
Target Start/End: Original strand, 21641411 - 21641444
Alignment:
Q  354 aatttgggttgggcctaactcaaccttataaaac 387  Q
    |||||||||||||||||||||||||||| |||||    
T  21641411 aatttgggttgggcctaactcaaccttacaaaac 21641444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 378
Target Start/End: Original strand, 31626233 - 31626269
Alignment:
Q  342 ataccatattagaatttgggttgggcctaactcaacc 378  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  31626233 ataccatcttagaatttgggttggacctaactcaacc 31626269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 405
Target Start/End: Original strand, 36470526 - 36470582
Alignment:
Q  350 ttagaatttgggttgggcctaactc-aaccttataaaacaggcttgcgaggcgagga 405  Q
    ||||||||||||||||||||||||| |||||||| |||| || |||  |||||||||    
T  36470526 ttagaatttgggttgggcctaactcaaaccttatgaaactggtttgtcaggcgagga 36470582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 387
Target Start/End: Complemental strand, 40571654 - 40571607
Alignment:
Q  339 ttgataccatattagaatttgggttgggcctaactcaaccttataaaac 387  Q
    |||||||||| ||| ||||||| |||||||||||||||||||| |||||    
T  40571654 ttgataccatctta-aatttggattgggcctaactcaaccttacaaaac 40571607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 43955326 - 43955363
Alignment:
Q  350 ttagaatttgggttgggcctaactcaaccttataaaac 387  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  43955326 ttagaatttgggttgagcctaactcaaccttataaaac 43955363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 10485160 - 10485124
Alignment:
Q  340 tgataccatattagaatttgggttgggcctaactcaa 376  Q
    |||||||||||||||||||||||| ||||||||||||    
T  10485160 tgataccatattagaatttgggttaggcctaactcaa 10485124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 381
Target Start/End: Original strand, 39225012 - 39225043
Alignment:
Q  350 ttagaatttgggttgggcctaactcaacctta 381  Q
    ||||||||||||||||||||||||||||||||    
T  39225012 ttagaatttgggttgggcctaactcaacctta 39225043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 10485406 - 10485448
Alignment:
Q  121 agtctcacattgcatgagatatggtctaaaaatgtgtttataa 163  Q
    |||||||||||| ||||||||| |||| |||||||||||||||    
T  10485406 agtctcacattggatgagatatagtctgaaaatgtgtttataa 10485448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 387
Target Start/End: Complemental strand, 10450193 - 10450148
Alignment:
Q  342 ataccatattagaatttgggttgggcctaactcaaccttataaaac 387  Q
    ||||||| ||||||||||||||  ||||||||||||| ||||||||    
T  10450193 ataccatcttagaatttgggttttgcctaactcaaccctataaaac 10450148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 407
Target Start/End: Original strand, 13574911 - 13574980
Alignment:
Q  339 ttgataccatattagaatttg-ggttgggcctaactcaaccttataaaacaggcttgcgaggcgaggatt 407  Q
    ||||||||||||||||| ||| ||||||||||||| |||||  | ||||| |||||| |||| |||||||    
T  13574911 ttgataccatattagaaattgtggttgggcctaacacaaccccacaaaactggcttgtgaggtgaggatt 13574980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 31151869 - 31151832
Alignment:
Q  350 ttagaatttgggttgggcctaactcaaccttataaaac 387  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  31151869 ttagaatatgggttgggcctaactcaaccttacaaaac 31151832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 50187399 - 50187435
Alignment:
Q  345 ccatattagaatttgggttgggcctaactcaacctta 381  Q
    |||| |||||||||| |||||||||||||||||||||    
T  50187399 ccatcttagaatttgagttgggcctaactcaacctta 50187435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 19385726 - 19385767
Alignment:
Q  121 agtctcacattgcatgagatatggtctaaaaatgtgtttata 162  Q
    |||||||||||| ||||||||||| ||||||||| |||||||    
T  19385726 agtctcacattggatgagatatggcctaaaaatgagtttata 19385767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 26400805 - 26400842
Alignment:
Q  350 ttagaatttgggttgggcctaactcaaccttataaaac 387  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  26400805 ttagaatttgagttgggcctaactcaagcttataaaac 26400842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 394
Target Start/End: Original strand, 9592385 - 9592429
Alignment:
Q  350 ttagaatttgggttgggcctaactcaaccttataaaacaggcttg 394  Q
    |||||||||||| ||||||| ||||||||||| ||||| ||||||    
T  9592385 ttagaatttgggatgggcctgactcaaccttagaaaaccggcttg 9592429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 19385611 - 19385647
Alignment:
Q  208 acccaaattctaaaatggtatcaaagcctatcaaaga 244  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  19385611 acccaaattctaagatggtatcaaagcctatccaaga 19385647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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