View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12532_low_5 (Length: 468)

Name: NF12532_low_5
Description: NF12532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12532_low_5
NF12532_low_5
[»] chr6 (1 HSPs)
chr6 (14-438)||(31273671-31274095)
[»] chr1 (5 HSPs)
chr1 (17-447)||(26215135-26215554)
chr1 (31-392)||(37737098-37737459)
chr1 (30-194)||(9802095-9802259)
chr1 (139-201)||(49639396-49639458)
chr1 (31-64)||(32611003-32611036)
[»] chr3 (3 HSPs)
chr3 (14-447)||(23373624-23374056)
chr3 (43-266)||(19428244-19428467)
chr3 (139-201)||(53979841-53979903)
[»] chr2 (3 HSPs)
chr2 (114-446)||(4939057-4939389)
chr2 (114-446)||(5024147-5024479)
chr2 (31-392)||(23682280-23682641)
[»] chr7 (4 HSPs)
chr7 (16-392)||(3004963-3005339)
chr7 (79-182)||(19813037-19813140)
chr7 (121-194)||(18477788-18477861)
chr7 (142-240)||(18480003-18480101)
[»] scaffold0164 (1 HSPs)
scaffold0164 (139-201)||(25469-25531)
[»] chr8 (3 HSPs)
chr8 (145-203)||(18550969-18551027)
chr8 (139-200)||(15194824-15194885)
chr8 (142-242)||(19873107-19873207)
[»] chr4 (1 HSPs)
chr4 (139-200)||(18255691-18255752)
[»] chr5 (1 HSPs)
chr5 (328-401)||(26465343-26465416)


Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 14 - 438
Target Start/End: Complemental strand, 31274095 - 31273671
Alignment:
Q  14 cagagaaccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatg 113  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  31274095 cagagaaccccaaaatctgaagagctgaatctctaggaaagaataaacctttgcctaaagatgttttaagatatttgagtactctcatagcagcagaatg 31273996  T
Q  114 atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagc 213  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31273995 atgaacttgtgtacgcttagcgaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagc 31273896  T
Q  214 cttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagac 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31273895 cttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagac 31273796  T
Q  314 ctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatcc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||    
T  31273795 ctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttggagtgagcaacttgcaaacccagaaagtacttgagttgtcc 31273696  T
Q  414 taaatctttaattttgaaagaagca 438  Q
    |||||||||||||||||||||||||    
T  31273695 taaatctttaattttgaaagaagca 31273671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 447
Target Start/End: Complemental strand, 26215554 - 26215135
Alignment:
Q  17 agaaccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatg 116  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||  ||| |||||||||||||||||||||| ||||||||||||| |||||||||    
T  26215554 agaaccccaaaatctgaagagctgaatctctaggaaaaaataaaccttttcctagagatgttttaagatatttgagcactctcatagcagcagaatgatg 26215455  T
Q  117 aacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagcctt 216  Q
    |||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  26215454 aacttgggtaggcttagtgaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacagcctaccaacaagcatt 26215355  T
Q  217 ctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacctg 316  Q
    ||||||| ||| | ||||||||||||| ||||||||||| |||||||||| | ||||||||||||||||||||||| || ||||||||||||||||||||    
T  26215354 ctgtaaggagagacatctgtgtatggttgactggaatcatgatgaagttttatagaagggtcagaaggagtggaaacagatttagagtgagtgagacctg 26215255  T
Q  317 aatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatcctaa 416  Q
    ||| ||||||||||||||||           ||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||| ||||||    
T  26215254 aattagcaagaagatctaga-----------ctgacaaagtgagatactttgtttagagtgagcaacttccaaacccagaaagtacttgagttgtcctaa 26215166  T
Q  417 atctttaattttgaaagaagcatgcaagatg 447  Q
    |||||||||||||||||||| ||||| ||||    
T  26215165 atctttaattttgaaagaagtatgcaggatg 26215135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 31 - 392
Target Start/End: Original strand, 37737098 - 37737459
Alignment:
Q  31 tgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggct 130  Q
    |||| ||| |||||||| ||||||| ||| |||| ||||||| |  |||| || ||  |||| ||||||||||||| ||  | ||| | |||||| ||||    
T  37737098 tgaatagtggaatctctgggaaagagtaatcctttgcctggacaacttttgaggtacctgagcactctcatagcagcagtgtaatgtatttgtgttggct 37737197  T
Q  131 tagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatat 230  Q
    | | ||| || || |||||||||||  | | ||| ||||||||||||||||||||||| |||||||| |  |||||||  |  || || |||| ||| ||    
T  37737198 tggtgagaaattgactcaattgttgtattataaaggtaatatcaggtcttgttgtgttcagatacaatagtctaccaatcaatctcctataagaagaaat 37737297  T
Q  231 atctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacctgaatcagcaagaaga 330  Q
    ||||   || || ||||||||||||  ||| ||||| | |||||| || ||||||||||| |  |||||||| |     ||||||||||||||||| | |    
T  37737298 atcttcataaggaggactggaatcattatgcagtttgatagaaggatctgaaggagtggatactggtttagaattgacaagacctgaatcagcaagcaaa 37737397  T
Q  331 tctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacc 392  Q
    || |||||||| ||||| ||||| | |||||| ||||||||  | |||||||| || |||||    
T  37737398 tccagacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaacc 37737459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 9802095 - 9802259
Alignment:
Q  30 ctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggc 129  Q
    |||||| || ||||||||||  ||||| ||||||| ||||||| |  | ||||| ||  |||||||||||||||||| || |   ||||  ||||| ||     
T  9802095 ctgaagtgtggaatctctagtgaagaacaaacctttgcctggacaactcttaaggtacctgagtactctcatagcagcagtaaagtgaatatgtgtgggt 9802194  T
Q  130 ttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagata 194  Q
    |||| ||| || || ||||||||||||||||  ||||||||||||||||||||||| || |||||    
T  9802195 ttagtgagaaattgactcaattgttgagtaatgaaagtaatatcaggtcttgttgtattgagata 9802259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 49639396 - 49639458
Alignment:
Q  139 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac 201  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  ||||||||||||||    
T  49639396 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac 49639458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 32611003 - 32611036
Alignment:
Q  31 tgaagagttgaatctctaggaaagaataaacctt 64  Q
    ||||||| ||||||||||||||||||||||||||    
T  32611003 tgaagaggtgaatctctaggaaagaataaacctt 32611036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 447
Target Start/End: Original strand, 23373624 - 23374056
Alignment:
Q  14 cagagaaccccaaaa-tctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaat 112  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||| |||||||||| || |||||    
T  23373624 cagagaaccccaaaaatatgaagagttgaatctctaggaaataataaacctttgcctgaagatgttttaagatatctgagcactctcatagtagcagaat 23373723  T
Q  113 gatgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaag 212  Q
    | |||||||| |||||||| |  ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||    
T  23373724 ggtgaacttgggtaggcttggtaaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgctgtgttaagatgcaacaacctaccaactag 23373823  T
Q  213 ccttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgaga 312  Q
    ||||||||||||| | ||  | |||||| |||||||||||||| |||||||||| | |||||  ||| |||||||||||  |||||||||||||||||||    
T  23373824 ccttctgtaagcaaagatgaccgtgtat-gtggactggaatcatgatgaagttttatagaagtatcaaaaggagtggaagcaggtttagagtgagtgaga 23373922  T
Q  313 cctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatc 412  Q
    ||| |||||||||||| ||||||||||||||||| || ||||||||||||||| ||||   | ||||||||||| ||||||  ||| || ||||| |  |    
T  23373923 cctaaatcagcaagaatatctagacaatattttcccttacaaagtgagataccctgttgataatgagcaacttctaaaccctaaaaatatttgagct-gc 23374021  T
Q  413 ctaaatctttaattttgaaagaagcatgcaagatg 447  Q
    ||||||| || ||||||||||||||||||| ||||    
T  23374022 ctaaatcctttattttgaaagaagcatgcaggatg 23374056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 43 - 266
Target Start/End: Complemental strand, 19428467 - 19428244
Alignment:
Q  43 tctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggcttagcgaggaact 142  Q
    |||||||||||||||||||| | || |||| ||| |||||| ||  |||| ||||||||||||| | |||| |||||||| ||||| ||||  ||||| |    
T  19428467 tctctaggaaagaataaacccttgcttggaaatgatttaaggtacctgagcactctcatagcagcataatggtgaacttgagtaggtttagtaaggaatt 19428368  T
Q  143 ggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatatatctgtgtatgg 242  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||| | |||||| |||||||| || |||||||||||    
T  19428367 ggctcaattgttgagtgacaaaggtaatgtcaggtcttgttgtgttgagatacaacaacctaccaactaaccttctataagcagaaatgtctgtgtatgg 19428268  T
Q  243 tggactggaatcacgatgaagttt 266  Q
     |||||||||||| ||||||||||    
T  19428267 gggactggaatcatgatgaagttt 19428244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 53979903 - 53979841
Alignment:
Q  139 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac 201  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  ||||||||||||||    
T  53979903 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac 53979841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 114 - 446
Target Start/End: Original strand, 4939057 - 4939389
Alignment:
Q  114 atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagc 213  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||  ||||| |||||||||||| | || ||||| || |  |  ||| |||  |      
T  4939057 atgaacttgtgtaggcttagtgaggaactggctaagttgttgagtaatgaaagtgatatcaggtcttttggtattaaggtatagaagtctatcaatcaat 4939156  T
Q  214 cttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagac 313  Q
    ||||| || | ||| || |||   || || |  ||||||||| |||| |  || ||||| || |||||||| |||||||||||||| || | ||| ||||    
T  4939157 cttctatatgaagaaatgtcttcataaggagagctggaatcatgatgtaacttcacagatggatcagaaggtgtggaaataggtttggaataagtaagac 4939256  T
Q  314 ctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatcc 413  Q
     ||||||||| | |||||| | ||||||||||||||| ||| | |||||||| ||||   | ||||| || || ||||| ||| | || || |||| |||    
T  4939257 ttgaatcagccaaaagatccaaacaatattttctctggcaatgagagataccctgttgagaatgagccacctctaaaccaagataatattttagttgtcc 4939356  T
Q  414 taaatctttaattttgaaagaagcatgcaagat 446  Q
    || |||||| |||||||| ||||||||||||||    
T  4939357 tagatctttgattttgaaggaagcatgcaagat 4939389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 114 - 446
Target Start/End: Original strand, 5024147 - 5024479
Alignment:
Q  114 atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagc 213  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||  ||||| |||||||||||| | || ||||| || |  |  ||| |||  |      
T  5024147 atgaacttgtgtaggcttagtgaggaactggctaagttgttgagtaatgaaagtgatatcaggtcttttggtattaaggtatagaagtctatcaatcaat 5024246  T
Q  214 cttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagac 313  Q
    ||||| || | ||| || |||   || || |  ||||||||| |||| |  || ||||| || |||||||| |||||||||||||| || | ||| ||||    
T  5024247 cttctatatgaagaaatgtcttcataaggagagctggaatcatgatgtaacttcacagatggatcagaaggtgtggaaataggtttggaataagtaagac 5024346  T
Q  314 ctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatcc 413  Q
     ||||||||| | |||||| | ||||||||||||||| ||| | |||||||| ||||   | ||||| || || ||||| ||| | || || |||| |||    
T  5024347 ttgaatcagccaaaagatccaaacaatattttctctggcaatgagagataccctgttgagaatgagccacctctaaaccaagataatattttagttgtcc 5024446  T
Q  414 taaatctttaattttgaaagaagcatgcaagat 446  Q
    || |||||| |||||||| ||||||||||||||    
T  5024447 tagatctttgattttgaaggaagcatgcaagat 5024479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 31 - 392
Target Start/End: Complemental strand, 23682641 - 23682280
Alignment:
Q  31 tgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggct 130  Q
    |||| ||| |||||| | ||||| | ||| |||| ||||||| |  |||| |||||  |||| ||||||||||||| |   | ||| |||||||| ||||    
T  23682641 tgaatagtggaatctttgggaaaaagtaatcctttgcctggacaacttttgagatacctgagcactctcatagcagcaatgtaatgtacttgtgttggct 23682542  T
Q  131 tagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatat 230  Q
    | | ||| || || ||||||||||| || | ||| ||||||||||||||||||||||| |||||||| |  |||||||  |  || || |||| ||| ||    
T  23682541 tggtgagaaattgactcaattgttgtgttataaaggtaatatcaggtcttgttgtgttcagatacaatagtctaccaatcaatctcctataagaagaaat 23682442  T
Q  231 atctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacctgaatcagcaagaaga 330  Q
    ||||   ||  | ||||||||||||  ||| | ||| | |||||| || ||||||||||| |  |||||||| |     ||||||||||||||||| | |    
T  23682441 atcttcataaagaggactggaatcattatgcaatttgatagaaggatctgaaggagtggatactggtttagaattgacaagacctgaatcagcaagcaaa 23682342  T
Q  331 tctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacc 392  Q
    || |||||||| ||||| ||||| | ||| |||||||||||  | |||||||| || |||||    
T  23682341 tccagacaatactttctttgacacaatgaaataccttgtttagaatgagcaacctctaaacc 23682280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 3005339 - 3004963
Alignment:
Q  16 gagaaccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgat 115  Q
    ||||| |||| || ||||| ||| |||||||| ||||||| ||| |||| ||||||| |  |||| || ||  |||| ||||||||||||| ||  | ||    
T  3005339 gagaaacccagaagctgaatagtggaatctctgggaaagagtaatcctttgcctggataacttttgaggtacctgagcactctcatagcagcagtgtaat 3005240  T
Q  116 gaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagcct 215  Q
    | | |||||| ||||| | ||| || || ||||||||||| || | ||| ||||||||||||||||||||||| |||||||| |  |||||||  |  ||    
T  3005239 gtatttgtgttggcttggtgagaaattgactcaattgttgtgttataaaggtaatatcaggtcttgttgtgttcagatacaatagtctaccaatcaatct 3005140  T
Q  216 tctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacct 315  Q
     || |||| ||| ||||||   ||  | ||||||||||||  ||| ||||| | |||| | || ||||||||||| |  |||||||| |     ||||||    
T  3005139 cctataagaagaaatatcttcataaagaggactggaatcattatgcagtttgatagaacgatctgaaggagtggatactggtttagaattgacaagacct 3005040  T
Q  316 gaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacc 392  Q
    ||||||||||| | ||| |||||||| ||||| ||||| | |||||| ||||||||  | |||||||| || |||||    
T  3005039 gaatcagcaagcaaatccagacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaacc 3004963  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 19813037 - 19813140
Alignment:
Q  79 ttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtc 178  Q
    ||||||||| |||||||||||||||||| |  ||  ||||  |||||||| || | ||| ||||||||||||||||| |||| ||| ||||||| |||||    
T  19813037 ttaagatatctgagtactctcatagcagcattatagtgaatgtgtgtaggtttggagagaaactggctcaattgttgtgtaataaaggtaatattaggtc 19813136  T
Q  179 ttgt 182  Q
    ||||    
T  19813137 ttgt 19813140  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 18477861 - 18477788
Alignment:
Q  121 tgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagata 194  Q
    |||||||| |||  ||| || |||||||||| ||||||||||||||||||||||||||| ||||| || |||||    
T  18477861 tgtgtaggtttattgagaaattggctcaattcttgagtaacaaaagtaatatcaggtctagttgtattgagata 18477788  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 18480003 - 18480101
Alignment:
Q  142 tggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatatatctgtgtat 240  Q
    |||||||||||||||||||  || ||||| || ||||| ||||  || | |||||| || || |||||||| |||||||||||||  ||||||||||||    
T  18480003 tggctcaattgttgagtaatgaaggtaatgtctggtctagttgcattcaaatacaataatctcccaacaagtcttctgtaagcaggaatatctgtgtat 18480101  T

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Target: scaffold0164 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 25469 - 25531
Alignment:
Q  139 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac 201  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  ||||||||||||||    
T  25469 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac 25531  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 18550969 - 18551027
Alignment:
Q  145 ctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacct 203  Q
    ||||||||||||||||||||||| ||||||||||||||||| || ||||| | ||||||    
T  18550969 ctcaattgttgagtaacaaaagtgatatcaggtcttgttgtattgagataaagcaacct 18551027  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 15194885 - 15194824
Alignment:
Q  139 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaa 200  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  |||||||||||||    
T  15194885 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaa 15194824  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 19873207 - 19873107
Alignment:
Q  142 tggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatatatctgtgtatg 241  Q
    |||||||||||||||||||  || ||||| |  ||||| ||||  || | |||||| || || |||||||| |||||||||||||  |||||||||||||    
T  19873207 tggctcaattgttgagtaatgaaggtaatgtatggtctagttgcattcaaatacaataatctcccaacaagtcttctgtaagcaggaatatctgtgtatg 19873108  T
Q  242 g 242  Q
    |    
T  19873107 g 19873107  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 18255752 - 18255691
Alignment:
Q  139 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaa 200  Q
    ||||| ||||||||||||  |||||||| ||||||||||||||| ||  |||||||||||||    
T  18255752 aactgactcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaa 18255691  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 401
Target Start/End: Original strand, 26465343 - 26465416
Alignment:
Q  328 agatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagta 401  Q
    ||||| |||||||||||||| || ||||| ||||| ||||||  | | ||||||||||| ||||| ||||||||    
T  26465343 agatcaagacaatattttctttggcaaagagagatgccttgtgaggaatgagcaacttctaaaccaagaaagta 26465416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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