View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12532_low_7 (Length: 431)
Name: NF12532_low_7
Description: NF12532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12532_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Original strand, 39878518 - 39878924
Alignment:
| Q |
17 |
aattgatctcacgtgaaatggaaagttcttctgatggaagaaagttcgagaagcttcatcttggagagtatcaatgggttacgtatggaaaggtttttga |
116 |
Q |
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| T |
39878518 |
aattgatctcacgtgaaatggaaagttcttctgatggaagaaagttcgagaagcttcatcttggagagtatcaatgggttacgtatgggaaggtttttga |
39878617 |
T |
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| Q |
117 |
atctgtttgtagttttgcttctggtttggtgaagattggtcatgttagagaagaacgtgttgcaatttatgctgacactagagaagaatggtttattgca |
216 |
Q |
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| T |
39878618 |
atctgtttgtagttttgcttctggtttggtgaagattggtcatgttagagaagaacgtgttgcaatttatgctgacactagagaagaatggtttattgca |
39878717 |
T |
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| Q |
217 |
ttgcaggtgtttgtttttatgcttcaatgaaaaaattattctgatttttgttcagttttgaaatttgaacttagatggaagagaatgattttacgcnnnn |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39878718 |
ttgcaggtgtttgtttttatgcttcaatgaaaaaatgattctgatttttgttcagttttgaaatttgaacttagatggaagagaatgattttacgctttt |
39878817 |
T |
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| Q |
317 |
nnngttcgttcaggcttgcttcaggagaaatgtgactgttgttaccatttatgcttctttgggagaagaagctttgtgtcactcattgaacgaggtttgc |
416 |
Q |
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| T |
39878818 |
tttgttcgttcaggcttgcttcaggagaaatgtgactgttgttaccatttatgcttctttgggagaagaagctttgtgtcactcattgaacgaggtttgc |
39878917 |
T |
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| Q |
417 |
tctctgc |
423 |
Q |
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| T |
39878918 |
tctctgc |
39878924 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 413
Target Start/End: Complemental strand, 10517408 - 10517320
Alignment:
| Q |
325 |
ttcaggcttgcttcaggagaaatgtgactgttgttaccatttatgcttctttgggagaagaagctttgtgtcactcattgaacgaggtt |
413 |
Q |
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|||||| ||| |||||| |||| ||||| ||||| || || ||||| || |||||||| |||||||| |||||||||||||| |||||| |
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| T |
10517408 |
ttcagggttgtttcaggcgaaacgtgacagttgtaactatgtatgcatcattgggagaggaagctttatgtcactcattgaatgaggtt |
10517320 |
T |
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