View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12532_low_8 (Length: 414)
Name: NF12532_low_8
Description: NF12532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12532_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 13 - 407
Target Start/End: Complemental strand, 34054958 - 34054566
Alignment:
| Q |
13 |
cagttatagccaaatcaaaagcttggcgaccgaggagtgaagcaatactttaggccagagttcttgaataggctggatgaaattattttgaggcaactta |
112 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34054958 |
cagttataaccaaatcaaaagcttggcgaccgaggagtgaagcaatactttaggccagagttcttgaataggctggatgaaattatc--gaggcaactta |
34054861 |
T |
|
| Q |
113 |
cataactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcgagagattgagctttcggtgacagagagatttagg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34054860 |
cataactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcgagagattgagctttcggtgacagagagatttagg |
34054761 |
T |
|
| Q |
213 |
aagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaagattgagctctctgtgacagggagattaaagagggtgactctgttata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34054760 |
aagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaagattgagctctctgtgacagggagattaaagagggtgactctgttata |
34054661 |
T |
|
| Q |
313 |
gtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcctcttcctatgtaatatggctgcctttg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34054660 |
gtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcctcttcctgtgtaatatggctgcctttg |
34054566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 47383035 - 47383293
Alignment:
| Q |
13 |
cagttatagccaaatcaaaagcttggcgaccgaggag-tgaagcaatactttaggccagagttcttgaataggctggatgaaattatt---ttgaggcaa |
108 |
Q |
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|||||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| |
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| T |
47383035 |
cagttataaccgaatcaaaagcttggtgaccgaggagctgaagcaatactttaggccagagttcttgaataggctggatgaaatgattgttttcaggcaa |
47383134 |
T |
|
| Q |
109 |
cttacataactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcga-gagattgagctttcggtgacagagagat |
207 |
Q |
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|||||| ||||||| |||||| |||||| | ||||||||||||||| |||| |||| ||||||| | | ||||||||||| || ||||||||||||| |
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| T |
47383135 |
cttacaaaactggaggttaaggagatagctgatataatgctgaaggaggtgttcgagagactgaaaaccaaagagattgagctctcagtgacagagagat |
47383234 |
T |
|
| Q |
208 |
ttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaaga |
266 |
Q |
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||||| ||||||| |||||| |||||||| |||||||||||||| |||||||||||||| |
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| T |
47383235 |
ttagggagagagtggtcgacgaaggttataatcctagttatggtgccagacctctaaga |
47383293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 47818100 - 47818366
Alignment:
| Q |
13 |
cagttatagccaaatcaaaagcttggcgaccgaggag-tgaagcaatactttaggccagagttcttgaataggctggatgaa---attattttgaggcaa |
108 |
Q |
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|||||||| || |||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |
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| T |
47818100 |
cagttataaccgaatcaaaagcttggtgatcgaggagctgaagcaatactttaggccagagttcttgaataggctggatgaaatgattgttttcaggcaa |
47818199 |
T |
|
| Q |
109 |
cttacataactggatgtta-------agtagatagtttgtataa-tgctgaaggaagtgtcagagaaactgaaagtc-gagagattgagctttcggtgac |
199 |
Q |
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|||||| ||||||| | || || |||||| | ||||| |||| ||||| |||| |||| ||||||| | ||||||||||||||| ||||| |
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| T |
47818200 |
cttacaaaactggaggctaaggagttaggagatagctgatataattgcttaaggaggtgttcgagagactgaaaaccaaagagattgagctttcagtgac |
47818299 |
T |
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| Q |
200 |
agagagatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaaga |
266 |
Q |
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||||||||||||| ||||||| ||||| |||||||| |||||| ||||||| |||||||||||||| |
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| T |
47818300 |
agagagatttagggagagagtggtcgatgaaggttataatcctaattatggtgccagacctctaaga |
47818366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 286 - 380
Target Start/End: Original strand, 47383348 - 47383442
Alignment:
| Q |
286 |
gagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcc |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
47383348 |
gagattaaagagggtgactctgttatagtggatgctgattccgatggaaatgtgattgtgctcaatggtagtagtggtgctccaaattcattgcc |
47383442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 286 - 380
Target Start/End: Original strand, 47818421 - 47818513
Alignment:
| Q |
286 |
gagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcc |
380 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||| |
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| T |
47818421 |
gagattaaagagggcgactct--tatagtggatgctgattctgatggaaatgtgattgtgctcaatggtagtagtggtgctgcaaattcattgcc |
47818513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 45116297 - 45116366
Alignment:
| Q |
286 |
gagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggta |
355 |
Q |
| |
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||||| |||||||||||||| || |||||||||| |||||| || || ||||| ||||| |||||||||| |
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| T |
45116297 |
gagatcaaagagggtgactccgtaatagtggatgttgattccgagggtaatgtgattgttctcaatggta |
45116366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 25 - 266
Target Start/End: Original strand, 40245761 - 40246007
Alignment:
| Q |
25 |
aatcaaaagcttggcgaccgaggag-tgaagcaatactttaggccagagttcttgaataggctggatgaaattatt---ttgaggcaacttacataactg |
120 |
Q |
| |
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|||||| ||||||| |||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||| ||| || |||||||| || ||||| |
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| T |
40245761 |
aatcaagagcttggtgaccgaagagctgaaacaatactttaggccagagttcttgaataggcttgatgaaatgattgttttcaggcaactcactaaactg |
40245860 |
T |
|
| Q |
121 |
gatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcga-gagattgagctttcggtgacagagagatttaggaagagag |
219 |
Q |
| |
|
|| |||||| |||||| ||||||||||||||| |||| |||| ||||||| | | ||||||||||| || |||||||||||||||||| |||||| |
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| T |
40245861 |
gaggttaaggagatagcagatataatgctgaaggaggtgttcgagagactgaaaaccaaagagattgagctctcagtgacagagagatttagggagagag |
40245960 |
T |
|
| Q |
220 |
ttgtcgacaaaggttatgatcctagttatggtcccagacctctaaga |
266 |
Q |
| |
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| |||||| |||||||| ||||||||||||| |||| ||||||||| |
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| T |
40245961 |
tggtcgacgaaggttataatcctagttatggggccaggcctctaaga |
40246007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 283 - 380
Target Start/End: Original strand, 40246059 - 40246156
Alignment:
| Q |
283 |
agggagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcc |
380 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||| ||||||||||||||||||||| |
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| T |
40246059 |
agggagattaaagagggcgactctgttatagtggatgctgattctgatggaaacgtgattgtactcaacggtagtactggtgctccagattcattgcc |
40246156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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