View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12532_low_9 (Length: 401)
Name: NF12532_low_9
Description: NF12532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12532_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 20 - 376
Target Start/End: Original strand, 8641524 - 8641880
Alignment:
| Q |
20 |
gttctaggtactgcttttgaaaataaatcagttctcaatctatactttcttgacagtggagattattccaaagttccgacgattcatggttatgattgga |
119 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8641524 |
gttcaaggtactgtctttgaaaataaatcagttctcaatctatactttcttgacagtggagattattccaaagttccgacgattcctggttatgattgga |
8641623 |
T |
|
| Q |
120 |
tcaagccctcacagcaactttggtttgagcgaacgtctgctaatcttcgggtactatcacattagcttataccaaattatctagtttctctttattgttt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8641624 |
tcaagccctcacagcaactttggtttgagcgaacgtctgctaatcttcgggtactatcacattagcttataccaaattatctagtttctctttattgttt |
8641723 |
T |
|
| Q |
220 |
agtatctgacttcactctttatttattctgcagaatgcatatataaaaggaccggcgccacaaaaagaagctgctcctggtcttgcatactttcacatcc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8641724 |
agtatctgacttcactctttatttattctgcagaatgcatatataaaaggaccggcgccacaaaaagaagctgctcctggtcttgcatactttcacatcc |
8641823 |
T |
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| Q |
320 |
ccttgccggaatatgcaagtcttgattcatcaaacatgacaggtgtgaaaatggaaa |
376 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8641824 |
ccttaccggaatatgcaagtcttgattcatcaaacatgacaggtgtgaaaatggaaa |
8641880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 20 - 376
Target Start/End: Original strand, 8648104 - 8648460
Alignment:
| Q |
20 |
gttctaggtactgcttttgaaaataaatcagttctcaatctatactttcttgacagtggagattattccaaagttccgacgattcatggttatgattgga |
119 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8648104 |
gttcaaggtactgtctttgaaaataaatcagttctcaatctatactttcttgacagtggagattattccaaagttccgacgattcctggttatgattgga |
8648203 |
T |
|
| Q |
120 |
tcaagccctcacagcaactttggtttgagcgaacgtctgctaatcttcgggtactatcacattagcttataccaaattatctagtttctctttattgttt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8648204 |
tcaagccctcacagcaactttggtttgagcgaacgtctgctaatcttcgggtactatcacattagcttataccaaattatctagtttctctttattgttt |
8648303 |
T |
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| Q |
220 |
agtatctgacttcactctttatttattctgcagaatgcatatataaaaggaccggcgccacaaaaagaagctgctcctggtcttgcatactttcacatcc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8648304 |
agtatctgacttcactctttatttattctgcagaatgcatatataaaaggaccggcgccacaaaaagaagctgctcctggtcttgcatactttcacatcc |
8648403 |
T |
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| Q |
320 |
ccttgccggaatatgcaagtcttgattcatcaaacatgacaggtgtgaaaatggaaa |
376 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8648404 |
ccttaccggaatatgcaagtcttgattcatcaaacatgacaggtgtgaaaatggaaa |
8648460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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