View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12533_high_11 (Length: 204)
Name: NF12533_high_11
Description: NF12533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12533_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 8e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 47184967 - 47184777
Alignment:
| Q |
1 |
actgctggaatgattgctccggccaatgatattctccacccatatccaccttccattctgtttttcatataaacaattattatagactattcaaagtttt |
100 |
Q |
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| T |
47184967 |
actgctggaatgattgctccggccaatgatattctccacccatatccaccttccattctgtttttcatataaacaattattatagactattcaaagtttt |
47184868 |
T |
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| Q |
101 |
caattaattaaaatgttattatgaagattattaatcaaaataaacttacttcgatgtaaaccagttgacaaggtttgctatgaaaattcct |
191 |
Q |
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| T |
47184867 |
caattaattaaaatgttattatgaagattattaatcaaatttaacttactttgatgtaaaccagttgacaaggtttgctatgaaaattcct |
47184777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 47197849 - 47197656
Alignment:
| Q |
1 |
actgctggaatgattgctccggccaatgatattctccacccatatccaccttccattctgtttttca-tataaacaattattatagacta-ttcaaagtt |
98 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||| || |||||||| |||||| | || |||||| | |
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| T |
47197849 |
actgctggaatgattgctccagccaatgatactctccacccatatccacctttgattctgttttccaatataaacagttattacattatagttcaaaata |
47197750 |
T |
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| Q |
99 |
ttcaattaattaaaa-tgttattatgaagattattaatcaaaataaacttacttcgatgtaaaccagttgacaaggtttgctatgaaaattcct |
191 |
Q |
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| T |
47197749 |
tttacttagttaaaaatgttattacgaatattattaatcaaatttaacttactttgatgtaaaccagttgacaaggtttgctatgaaaattcct |
47197656 |
T |
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