View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12533_high_3 (Length: 418)

Name: NF12533_high_3
Description: NF12533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12533_high_3
NF12533_high_3
[»] chr2 (12 HSPs)
chr2 (1-200)||(5005623-5005822)
chr2 (250-416)||(5006180-5006346)
chr2 (268-376)||(16426581-16426690)
chr2 (284-378)||(29921446-29921540)
chr2 (250-303)||(6609560-6609613)
chr2 (250-299)||(30899891-30899940)
chr2 (284-376)||(40992266-40992359)
chr2 (253-303)||(16903410-16903460)
chr2 (250-303)||(6610029-6610082)
chr2 (250-303)||(15562026-15562079)
chr2 (250-303)||(16903883-16903936)
chr2 (250-303)||(30899399-30899452)
[»] chr3 (11 HSPs)
chr3 (1-198)||(26836503-26836700)
chr3 (250-416)||(26837066-26837235)
chr3 (284-376)||(37999508-37999600)
chr3 (284-374)||(38741307-38741397)
chr3 (284-377)||(46719705-46719798)
chr3 (307-380)||(46739683-46739756)
chr3 (250-303)||(24394720-24394773)
chr3 (250-303)||(5113207-5113260)
chr3 (250-303)||(20586081-20586134)
chr3 (250-303)||(20586570-20586623)
chr3 (250-303)||(26006155-26006208)
[»] chr6 (8 HSPs)
chr6 (254-376)||(28534779-28534901)
chr6 (250-376)||(18605011-18605137)
chr6 (255-378)||(1034735-1034859)
chr6 (268-380)||(10608228-10608340)
chr6 (283-380)||(930967-931064)
chr6 (250-303)||(7635133-7635186)
chr6 (250-303)||(18290481-18290534)
chr6 (322-378)||(9428033-9428089)
[»] chr5 (7 HSPs)
chr5 (250-387)||(42654846-42654983)
chr5 (250-303)||(3595786-3595839)
chr5 (250-303)||(7858336-7858389)
chr5 (250-303)||(8320884-8320937)
chr5 (250-303)||(8321373-8321426)
chr5 (250-303)||(12330648-12330701)
chr5 (250-299)||(24027196-24027245)
[»] chr1 (5 HSPs)
chr1 (250-376)||(32538415-32538541)
chr1 (288-377)||(49611471-49611560)
chr1 (250-303)||(38468915-38468968)
chr1 (250-303)||(43755858-43755911)
chr1 (253-305)||(32537657-32537709)
[»] chr7 (6 HSPs)
chr7 (250-376)||(33687662-33687788)
chr7 (284-376)||(44896090-44896182)
chr7 (268-376)||(41224754-41224863)
chr7 (284-376)||(29314625-29314718)
chr7 (250-302)||(33686935-33686987)
chr7 (250-303)||(25137421-25137474)
[»] chr4 (13 HSPs)
chr4 (268-376)||(39413534-39413642)
chr4 (284-377)||(52758621-52758714)
chr4 (255-378)||(11680290-11680414)
chr4 (255-378)||(11688569-11688693)
chr4 (284-376)||(49399474-49399566)
chr4 (284-376)||(31634147-31634240)
chr4 (268-380)||(25655547-25655659)
chr4 (284-380)||(53289517-53289613)
chr4 (282-380)||(3619040-3619138)
chr4 (284-378)||(12590113-12590207)
chr4 (268-380)||(46764280-46764392)
chr4 (250-303)||(5235383-5235436)
chr4 (250-303)||(20174979-20175032)
[»] scaffold0180 (1 HSPs)
scaffold0180 (284-380)||(23000-23096)
[»] chr8 (9 HSPs)
chr8 (255-378)||(41348158-41348282)
chr8 (268-376)||(41092200-41092309)
chr8 (284-376)||(35759151-35759243)
chr8 (268-386)||(42573607-42573725)
chr8 (275-380)||(36935666-36935771)
chr8 (284-380)||(30272142-30272238)
chr8 (250-369)||(42111525-42111643)
chr8 (3-48)||(28090818-28090863)
chr8 (268-373)||(35387381-35387485)
[»] scaffold0069 (1 HSPs)
scaffold0069 (332-386)||(1840-1894)
[»] scaffold0155 (1 HSPs)
scaffold0155 (268-376)||(17367-17476)
[»] scaffold0508 (1 HSPs)
scaffold0508 (250-303)||(4142-4195)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 5005623 - 5005822
Alignment:
Q  1 aaccaccggcaccaccgattttgatattaacttttcattataattgctagaacaagtaattaccacaacaaccattcttcttattaagatgtgtcgaaac 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5005623 aaccaccagcaccaccgattttgatattaacttttcattataattgctagaacaagtaattaccacaacaaccatttttcttattaagatgtgtcgaaac 5005722  T
Q  101 acaaaaacttagtttgattcaatgtagaattaactttgtcttactgctactcaatccatgatataaatgctttctatttgtactagataggaatcatact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  5005723 acaaaaacttagtttgattcaatgtagaattaactttgtcttaccgctactcaatccatgatacaaatgctttctatttgtactagatatgaatcatact 5005822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 250 - 416
Target Start/End: Complemental strand, 5006346 - 5006180
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaa 349  Q
    |||||||| ||||| ||||| |||||||| ||| ||||||| ||||||| |||||  |||||||||||||||||||||||| | ||||||||||||||||    
T  5006346 tagcatggaaaatgatagttattcccaccatgagaaagttactttttaatcattgaattaagtagggaacaaaattttaccattgtctctcaacacttaa 5006247  T
Q  350 ttttttccacatcatcttccaccaccaccctccccctaacaaacgcatttgcttccatccttctctg 416  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||    
T  5006246 ttttttccacatcatcttccaccaccacccttcccctaacaaaagcatttgctttcatccttctctg 5006180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 376
Target Start/End: Original strand, 16426581 - 16426690
Alignment:
Q  268 tttttcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacac-ttaattttttccacatcatct 366  Q
    ||||||||||| || |||||||| |||||||||||| | |||||||||||| | ||||||| | | |||| |||||||  || |||||||  ||||||||    
T  16426581 tttttcccaccatggaaaagttaatttttaaccatttgattaagtagggaatacaattttatcatggtctttcaacacactatttttttcttcatcatct 16426680  T
Q  367 tccaccacca 376  Q
    ||||||||||    
T  16426681 tccaccacca 16426690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 378
Target Start/End: Complemental strand, 29921540 - 29921446
Alignment:
Q  284 aaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatcttccaccaccacc 378  Q
    ||||||||||||||||||||   |||| ||||| ||| |||||||   | ||||||||||| | ||||||| | |||||||||||||||||||||    
T  29921540 aaagttagtttttaaccattaaattaaatagggtacacaattttataatggtctctcaacattaaatttttccgacatcatcttccaccaccacc 29921446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 6609560 - 6609613
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| || |||||||||||||||||||||    
T  6609560 tagcatgggaaaggctaatttttcccaccatggaaaagttagtttttaaccatt 6609613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 30899940 - 30899891
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaac 299  Q
    |||||||||||| | || ||||||||||| ||||||||||||||||||||    
T  30899940 tagcatgggaaaggctaatttttcccaccatgaaaaagttagtttttaac 30899891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 376
Target Start/End: Original strand, 40992266 - 40992359
Alignment:
Q  284 aaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacac-ttaattttttccacatcatcttccaccacca 376  Q
    |||||||||||||||||||| | |||| ||||||||| ||||||| | | |||| | |||||  || |||||||  ||||||||||||||||||    
T  40992266 aaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttttaacacactatttttttcttcatcatcttccaccacca 40992359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 16903410 - 16903460
Alignment:
Q  253 catgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    ||||||||| | || ||||||||||| || |||||||||||||||||||||    
T  16903410 catgggaaaggctaatttttcccaccatggaaaagttagtttttaaccatt 16903460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 6610082 - 6610029
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  6610082 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 6610029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 15562079 - 15562026
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  15562079 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 15562026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 16903936 - 16903883
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  16903936 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 16903883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 30899399 - 30899452
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  30899399 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 30899452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 26836503 - 26836700
Alignment:
Q  1 aaccaccggcaccaccgattttgatattaacttttcattataattgctagaacaagtaattaccacaacaaccattcttcttattaagatgtgtcgaaac 100  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| |||||||||||||||||||||||    
T  26836503 aaccaccagcaccatcgattttgatattaacttttcattataattgctagaacaagtatttacgacaacaatcatttttcttattaagatgtgtcgaaac 26836602  T
Q  101 acaaaaacttagtttgattcaatgtagaattaactttgtcttactgctactcaatccatgatataaatgctttctatttgtactagataggaatcata 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||    
T  26836603 acaaaaacttagtttgattcaatgtagaattaactttgtcttactgctactcaatatatgatataaatgctttctatttatactagataggaatcata 26836700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 250 - 416
Target Start/End: Complemental strand, 26837235 - 26837066
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaa 349  Q
    |||||||||||| | | |||| ||||||| ||  ||| |||||||||||||||||  |||||||||||||||||||||||| | ||||||||||||| ||    
T  26837235 tagcatgggaaaggcttgtttatcccaccatgggaaaattagtttttaaccattgaattaagtagggaacaaaattttaccatggtctctcaacactcaa 26837136  T
Q  350 ttttttccacatcatcttccaccaccaccct---ccccctaacaaacgcatttgcttccatccttctctg 416  Q
    |||||||||||||||||||||||||||||||   || ||||||||| |||||||||||||||||||||||    
T  26837135 ttttttccacatcatcttccaccaccacccttacccgcctaacaaaagcatttgcttccatccttctctg 26837066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 284 - 376
Target Start/End: Original strand, 37999508 - 37999600
Alignment:
Q  284 aaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatcttccaccacca 376  Q
    |||||||||||||||||||||  |||||||||||||||||||||||| |  |||||||||||| |||||||||||||||||||||||||||||    
T  37999508 aaagttagtttttaaccattgaattaagtagggaacaaaattttaccatgatctctcaacactcaattttttccacatcatcttccaccacca 37999600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 374
Target Start/End: Original strand, 38741307 - 38741397
Alignment:
Q  284 aaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatcttccaccac 374  Q
    |||||||||||||  ||||| | |||| ||||||||| ||||||||| | ||||||||||||| ||| ||||||||  |||||||||||||    
T  38741307 aaagttagtttttggccattagattaaatagggaacacaattttaccatggtctctcaacactaaatattttccaccacatcttccaccac 38741397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 377
Target Start/End: Original strand, 46719705 - 46719798
Alignment:
Q  284 aaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatcttccaccaccac 377  Q
    |||||||||||||  ||||| | |||| ||||||||| ||||||||| | ||||||||||| | ||| ||||| ||  ||||||||||||||||    
T  46719705 aaagttagtttttggccattagattaaatagggaacacaattttaccatggtctctcaacattaaatattttctaccacatcttccaccaccac 46719798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 380
Target Start/End: Original strand, 46739683 - 46739756
Alignment:
Q  307 ttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatcttccaccaccaccct 380  Q
    |||| ||||||||| ||||| | | | ||||||||||||| |||||||  ||||||||||||||||||||||||    
T  46739683 ttaaatagggaacataatttcatcatggtctctcaacactaaatttttgtcacatcatcttccaccaccaccct 46739756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 24394773 - 24394720
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||||| || ||||||||||| ||  ||||||||||||||||||||    
T  24394773 tagcatgggaaatgctaatttttcccaccatgggaaagttagtttttaaccatt 24394720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 5113207 - 5113260
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  5113207 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 5113260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 20586081 - 20586134
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  20586081 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 20586134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 20586623 - 20586570
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  20586623 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 20586570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 26006155 - 26006208
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  26006155 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 26006208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 254 - 376
Target Start/End: Original strand, 28534779 - 28534901
Alignment:
Q  254 atgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaatttt 353  Q
    |||| ||||||||||||||| |||| ||  || ||||||||||||| ||||| |||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  28534779 atggaaaatgttagtttttctcaccatgggaaggttagtttttaactattggattaaatagggaacaaaattttaccatagtctctcaacactcaatttt 28534878  T
Q  354 ttccacatcatcttccaccacca 376  Q
    |||||||||||||||||||||||    
T  28534879 ttccacatcatcttccaccacca 28534901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 250 - 376
Target Start/End: Original strand, 18605011 - 18605137
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaa 349  Q
    |||||||| ||| | || ||||| ||||| ||  ||||||| |||||||||||||  |||||||||||||| ||||||| | | ||||||||||||| ||    
T  18605011 tagcatggaaaaggctaattttttccaccatgggaaagttaatttttaaccattgaattaagtagggaacataattttatcatggtctctcaacactaaa 18605110  T
Q  350 ttttttccacatcatcttccaccacca 376  Q
    ||||||||||||||||||||| |||||    
T  18605111 ttttttccacatcatcttccatcacca 18605137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 378
Target Start/End: Original strand, 1034735 - 1034859
Alignment:
Q  255 tgggaaatgttagtttttccc-accgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaatttt 353  Q
    ||||||| ||||||||||||| ||| |   |||||||||||||||||||| | |||| ||||| ||| ||||||| | |  ||||||||||   ||||||    
T  1034735 tgggaaaggttagtttttccccaccataggaaagttagtttttaaccattagattaaatagggtacacaattttatcatgatctctcaacatcaaatttt 1034834  T
Q  354 ttccacatcatcttccaccaccacc 378  Q
    | |||||||||||||||||||||||    
T  1034835 tcccacatcatcttccaccaccacc 1034859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 380
Target Start/End: Complemental strand, 10608340 - 10608228
Alignment:
Q  268 tttttcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatctt 367  Q
    ||||||||||| ||  ||||||||||||| |||||| | |||| ||||||||| ||| |||   | |||||||| ||||  || ||||||||||||||||    
T  10608340 tttttcccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctcagcactagatcttttccacatcatctt 10608241  T
Q  368 ccaccaccaccct 380  Q
    |||||||||||||    
T  10608240 ccaccaccaccct 10608228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 380
Target Start/End: Original strand, 930967 - 931064
Alignment:
Q  283 aaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatcttccaccaccaccct 380  Q
    |||||||||||||| |||||| | |||| ||||||||| ||| |||   | ||||||||||||| ||| ||| | |||||||||||||||||||||||    
T  930967 aaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctcaacactaaatctttccaacatcatcttccaccaccaccct 931064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 7635133 - 7635186
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  7635133 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 7635186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 18290534 - 18290481
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  18290534 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 18290481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 9428089 - 9428033
Alignment:
Q  322 aattttaccgtagtctctcaacacttaattttttccacatcatcttccaccaccacc 378  Q
    ||||||| |||  |||||||||| | ||||||  |||||||||||||||||||||||    
T  9428089 aattttatcgtgatctctcaacattaaattttccccacatcatcttccaccaccacc 9428033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 250 - 387
Target Start/End: Original strand, 42654846 - 42654983
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacactta- 348  Q
    |||||||||||| | |||||||||| ||| ||  |||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||     
T  42654846 tagcatgggaaaggctagtttttcc-accatgggaaagttagtttttaaccattggattaagtagggaacaaaattttaccatggtctctcaacacttat 42654944  T
Q  349 attttttccacatcatcttccaccaccaccctcccccta 387  Q
     |||||| ||||| |||||||||||||||||| ||||||    
T  42654945 ttttttttcacattatcttccaccaccacccttccccta 42654983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 3595786 - 3595839
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  3595786 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 3595839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 7858336 - 7858389
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  7858336 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 7858389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 8320884 - 8320937
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  8320884 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 8320937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 8321426 - 8321373
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  8321426 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 8321373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 12330701 - 12330648
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  12330701 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 12330648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 24027196 - 24027245
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaac 299  Q
    |||||||||||| | || ||||||||||| || |||||||||||||||||    
T  24027196 tagcatgggaaaggctaatttttcccaccatggaaaagttagtttttaac 24027245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 250 - 376
Target Start/End: Complemental strand, 32538541 - 32538415
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaa 349  Q
    |||||||||||| | || ||||||||||| || ||||||||||||||||||||||  |||||||||||||| ||| ||| | | ||||||||||||| ||    
T  32538541 tagcatgggaaaggctaatttttcccaccatggaaaagttagtttttaaccattgaattaagtagggaacataatgttatcatggtctctcaacactaaa 32538442  T
Q  350 ttttttccacatcatcttccaccacca 376  Q
    |||||| |||||||||||||| |||||    
T  32538441 tttttttcacatcatcttccatcacca 32538415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 377
Target Start/End: Complemental strand, 49611560 - 49611471
Alignment:
Q  288 ttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatcttccaccaccac 377  Q
    |||||||||  ||||| | |||| ||||||||| ||||||||| | ||||||||||||| ||| ||||||||  ||||||||||||||||    
T  49611560 ttagtttttggccattagattaaatagggaacacaattttaccatggtctctcaacactaaatattttccaccacatcttccaccaccac 49611471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 38468915 - 38468968
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  38468915 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 38468968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 43755858 - 43755911
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  43755858 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 43755911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 32537657 - 32537709
Alignment:
Q  253 catgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccattgg 305  Q
    ||||||||| | || ||||||||||| ||  ||||||||||||||||||||||    
T  32537657 catgggaaaggctaatttttcccaccatgggaaagttagtttttaaccattgg 32537709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 250 - 376
Target Start/End: Complemental strand, 33687788 - 33687662
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaa 349  Q
    |||||||||||| | || ||||| ||||| ||| |||||||||||||||||||||  |||||||||||||| ||| ||| | | ||||||||||||| ||    
T  33687788 tagcatgggaaaggctaattttttccaccatgagaaagttagtttttaaccattgaattaagtagggaacataatgttatcatggtctctcaacactaaa 33687689  T
Q  350 ttttttccacatcatcttccaccacca 376  Q
      ||||||||||||||||||| |||||    
T  33687688 aattttccacatcatcttccatcacca 33687662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 376
Target Start/End: Original strand, 44896090 - 44896182
Alignment:
Q  284 aaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatcttccaccacca 376  Q
    |||||||||||||||||||| | |||| ||||| ||| ||||||| | | |||||||||||   ||||||| |||||||||||||||||||||    
T  44896090 aaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaacatcaaatttttcccacatcatcttccaccacca 44896182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 376
Target Start/End: Complemental strand, 41224863 - 41224754
Alignment:
Q  268 tttttcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacac-ttaattttttccacatcatct 366  Q
    ||||||||||| ||  |||||||||||||||||||| | |||| ||||||||| ||||||| | | |||| |||||||  || |||||||  ||||||||    
T  41224863 tttttcccaccatgggaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacacactatttttttcttcatcatct 41224764  T
Q  367 tccaccacca 376  Q
    ||||||||||    
T  41224763 tccaccacca 41224754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 376
Target Start/End: Original strand, 29314625 - 29314718
Alignment:
Q  284 aaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacac-ttaattttttccacatcatcttccaccacca 376  Q
    |||||||||||||||||||| | |||| ||||||||| ||||||| | | |||| |||||||  || |||||||  ||||||||||||||||||    
T  29314625 aaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacacactatttttttcttcatcatcttccaccacca 29314718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 33686935 - 33686987
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccat 302  Q
    |||||||||||| |||| ||||||||||| ||  |||||||||||||||||||    
T  33686935 tagcatgggaaaggttaatttttcccaccatgggaaagttagtttttaaccat 33686987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 25137421 - 25137474
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  25137421 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 25137474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 376
Target Start/End: Complemental strand, 39413642 - 39413534
Alignment:
Q  268 tttttcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatctt 367  Q
    ||||||||||| |   |||||||||||||||||||||| |||||||| ||||| ||||||| | | ||||||| ||||| ||||||||||||||||||||    
T  39413642 tttttcccaccataggaaagttagtttttaaccattggattaagtagagaacataattttatcatggtctctcgacactaaattttttccacatcatctt 39413543  T
Q  368 ccaccacca 376  Q
    ||| |||||    
T  39413542 ccatcacca 39413534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 377
Target Start/End: Complemental strand, 52758714 - 52758621
Alignment:
Q  284 aaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatcttccaccaccac 377  Q
    |||||||||||||  ||||| | |||| ||||||||| ||||||||| ||||||||||||| | ||| ||||||||  ||||||||||||||||    
T  52758714 aaagttagtttttggccattagattaaatagggaacacaattttaccatagtctctcaacattaaatattttccaccacatcttccaccaccac 52758621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 378
Target Start/End: Original strand, 11680290 - 11680414
Alignment:
Q  255 tgggaaatgttagtttt-tcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaatttt 353  Q
    ||||||| ||||||||| ||||||| ||  ||||||||||||| |||||| | |||| ||||||||| ||| |||   | |||||||| ||||  || ||    
T  11680290 tgggaaaggttagttttttcccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctcagcactagatctt 11680389  T
Q  354 ttccacatcatcttccaccaccacc 378  Q
    | |||||||||||||||||||||||    
T  11680390 tcccacatcatcttccaccaccacc 11680414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 378
Target Start/End: Original strand, 11688569 - 11688693
Alignment:
Q  255 tgggaaatgttagtttt-tcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaatttt 353  Q
    ||||||| ||||||||| ||||||| ||  ||||||||||||| |||||| | |||| ||||||||| ||| |||   | |||||||| ||||  || ||    
T  11688569 tgggaaaggttagttttttcccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctcagcactagatctt 11688668  T
Q  354 ttccacatcatcttccaccaccacc 378  Q
    | |||||||||||||||||||||||    
T  11688669 tcccacatcatcttccaccaccacc 11688693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 376
Target Start/End: Complemental strand, 49399566 - 49399474
Alignment:
Q  284 aaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatcttccaccacca 376  Q
    |||||||||||||||||||| | |||| ||||| | | ||||||| | | |||||||||||   ||||||| |||||||||||||||||||||    
T  49399566 aaagttagtttttaaccattagattaaatagggtatacaattttatcatggtctctcaacatcaaatttttcccacatcatcttccaccacca 49399474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 376
Target Start/End: Original strand, 31634147 - 31634240
Alignment:
Q  284 aaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacac-ttaattttttccacatcatcttccaccacca 376  Q
    |||||||||||||||||||| | |||| ||||||||| ||||||| | | |||| |||||||  || |||||||  ||||||||||||||||||    
T  31634147 aaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacacgctatttttttcttcatcatcttccaccacca 31634240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 380
Target Start/End: Complemental strand, 25655659 - 25655547
Alignment:
Q  268 tttttcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatctt 367  Q
    ||||||||||| ||  ||||||||||||| |||||| | |||| |||| |||| ||| |||   | |||||||| ||||  || ||| ||||||||||||    
T  25655659 tttttcccaccatgggaaagttagtttttgaccattagattaaataggaaacacaatgttattatggtctctcagcactagatctttcccacatcatctt 25655560  T
Q  368 ccaccaccaccct 380  Q
    |||||||||||||    
T  25655559 ccaccaccaccct 25655547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 380
Target Start/End: Original strand, 53289517 - 53289613
Alignment:
Q  284 aaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatcttccaccaccaccct 380  Q
    ||||||| ||||||| |||| | |||| ||||| ||| ||||||| | | |||||| ||||   ||||||| |||||||||||||||||||||||||    
T  53289517 aaagttaatttttaatcattagattaaatagggtacacaattttatcatggtctctgaacatcaaatttttcccacatcatcttccaccaccaccct 53289613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 380
Target Start/End: Original strand, 3619040 - 3619138
Alignment:
Q  282 aaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatcttccaccaccaccct 380  Q
    |||||||||  ||||||| ||| | |||| ||||  ||| ||||||| | |  |||||||||| | ||||||| |||||||||||||||||||||||||    
T  3619040 aaaaagttaagttttaactattagattaaataggatacacaattttatcatgatctctcaacattaaatttttcccacatcatcttccaccaccaccct 3619138  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 378
Target Start/End: Complemental strand, 12590207 - 12590113
Alignment:
Q  284 aaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatcttccaccaccacc 378  Q
    ||||||||||||| |||||| | |||| ||||||||| ||| |||   | |||||||| ||||  || ||| |||||||||||||||||||||||    
T  12590207 aaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctcagcactagatctttcccacatcatcttccaccaccacc 12590113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 380
Target Start/End: Original strand, 46764280 - 46764392
Alignment:
Q  268 tttttcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatctt 367  Q
    ||||||||||| ||  ||||||||||||| ||||||   |||| |||| |||| ||| |||   | |||||||| ||||  || ||| ||||||||||||    
T  46764280 tttttcccaccatgggaaagttagtttttgaccattaaattaaataggaaacacaatgttattatggtctctcagcactagatctttcccacatcatctt 46764379  T
Q  368 ccaccaccaccct 380  Q
    |||||||||||||    
T  46764380 ccaccaccaccct 46764392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 5235383 - 5235436
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  5235383 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 5235436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 20174979 - 20175032
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  20174979 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 20175032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 284 - 380
Target Start/End: Complemental strand, 23096 - 23000
Alignment:
Q  284 aaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatcttccaccaccaccct 380  Q
    |||||||||||| ||||||| | |||| ||||||||| ||||||| | | ||||||||||||| |||||||  ||||||||||||||||||||||||    
T  23096 aaagttagttttgaaccattagattaaatagggaacataattttatcatggtctctcaacactaaatttttgtcacatcatcttccaccaccaccct 23000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 378
Target Start/End: Original strand, 41348158 - 41348282
Alignment:
Q  255 tgggaaatgttagtttttccc-accgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaatttt 353  Q
    ||||||| ||||||||||||| ||| ||  |||||||||||||||||||| | |||| ||||| ||| ||||||| | | |||||||||||   ||||||    
T  41348158 tgggaaaggttagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaacatcaaatttt 41348257  T
Q  354 ttccacatcatcttccaccaccacc 378  Q
    | |||||||||||||||||||||||    
T  41348258 tcccacatcatcttccaccaccacc 41348282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 376
Target Start/End: Original strand, 41092200 - 41092309
Alignment:
Q  268 tttttcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacac-ttaattttttccacatcatct 366  Q
    ||||||||||| || ||||||||||||||||||||| | |||| ||||||||| ||||||| | | |||| |||||||  || |||||||  ||||||||    
T  41092200 tttttcccaccatggaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacacactatttttttcttcatcatct 41092299  T
Q  367 tccaccacca 376  Q
    ||||||||||    
T  41092300 tccaccacca 41092309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 376
Target Start/End: Complemental strand, 35759243 - 35759151
Alignment:
Q  284 aaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatcttccaccacca 376  Q
    |||||||||||||||||||| | |||| ||||| ||| ||||||| | | |||||||||||   ||||||| |||||||||||||||||||||    
T  35759243 aaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaacatcaaatttttcccacatcatcttccaccacca 35759151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 386
Target Start/End: Original strand, 42573607 - 42573725
Alignment:
Q  268 tttttcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatctt 367  Q
    ||||||||||| ||| ||| ||||||||| ||||||   |||| |||||||||  || |||   ||||||||||||| | ||| ||| ||||||||||||    
T  42573607 tttttcccaccatgagaaaattagtttttgaccattaaattaaatagggaacacgatgttattatagtctctcaacattaaatctttcccacatcatctt 42573706  T
Q  368 ccaccaccaccctccccct 386  Q
    ||||||||||||| |||||    
T  42573707 ccaccaccacccttcccct 42573725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 380
Target Start/End: Original strand, 36935666 - 36935771
Alignment:
Q  275 caccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatcttccaccac 374  Q
    |||| ||||||||||| |||||||  ||| | |||| ||||| ||| ||||||| | |  ||||||||||   |||||||||||||||||||||||||||    
T  36935666 caccatgaaaaagttaatttttaataattagattaaatagggtacacaattttatcatgatctctcaacatcaaattttttccacatcatcttccaccac 36935765  T
Q  375 caccct 380  Q
    ||||||    
T  36935766 caccct 36935771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 380
Target Start/End: Original strand, 30272142 - 30272238
Alignment:
Q  284 aaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatcttccaccaccaccct 380  Q
    ||||||| |||||||||||| | |||| ||||| ||| |||||||   |  ||||||||||   |||||||||||||||||||||||||||||||||    
T  30272142 aaagttaatttttaaccattagattaaatagggtacacaattttattatgatctctcaacatcaaattttttccacatcatcttccaccaccaccct 30272238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 369
Target Start/End: Original strand, 42111525 - 42111643
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaa 349  Q
    |||||||||||| | |||||||||  |||||| ||| |||||||||| ||||||   |||  ||||||| | ||||||| | | |||||||||||||  |    
T  42111525 tagcatgggaaaagctagtttttcataccgtggaaa-gttagtttttgaccattaaattagatagggaatataattttatcatggtctctcaacactaca 42111623  T
Q  350 ttttttccacatcatcttcc 369  Q
    ||||||||||||||||||||    
T  42111624 ttttttccacatcatcttcc 42111643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 28090818 - 28090863
Alignment:
Q  3 ccaccggcaccaccgattttgatattaacttttcattataattgct 48  Q
    ||||| ||||||||||||||| |||||||| |||||| ||||||||    
T  28090818 ccaccagcaccaccgattttggtattaactcttcattgtaattgct 28090863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 373
Target Start/End: Complemental strand, 35387485 - 35387381
Alignment:
Q  268 tttttcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacacttaattttttccacatcatctt 367  Q
    ||||| ||||| ||| ||||||||||||| |||||| | |||  |||| |||| | ||||| | | ||||||||| |||  |||||| ||||||||||||    
T  35387485 ttttttccaccttgagaaagttagtttttgaccatttgattagataggaaacacacttttatcat-gtctctcaatactacatttttgccacatcatctt 35387387  T
Q  368 ccacca 373  Q
    ||||||    
T  35387386 ccacca 35387381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 332 - 386
Target Start/End: Complemental strand, 1894 - 1840
Alignment:
Q  332 tagtctctcaacacttaattttttccacatcatcttccaccaccaccctccccct 386  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||||||||| |||||    
T  1894 tagtctctcaacactaaatatttcccacatcatcttccaccaccacccttcccct 1840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 376
Target Start/End: Original strand, 17367 - 17476
Alignment:
Q  268 tttttcccaccgtgaaaaagttagtttttaaccattgggttaagtagggaacaaaattttaccgtagtctctcaacac-ttaattttttccacatcatct 366  Q
    ||||||||||| ||  |||||||||||||||||||| | | || ||||||||| ||||||| | | |||| |||||||  || |||||||  ||||||||    
T  17367 tttttcccaccatgggaaagttagtttttaaccatttgatcaaatagggaacacaattttatcatggtctttcaacacactatttttttcttcatcatct 17466  T
Q  367 tccaccacca 376  Q
    ||||||||||    
T  17467 tccaccacca 17476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 4142 - 4195
Alignment:
Q  250 tagcatgggaaatgttagtttttcccaccgtgaaaaagttagtttttaaccatt 303  Q
    |||||||||||| | || ||||||||||| ||  ||||||||||||||||||||    
T  4142 tagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccatt 4195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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