View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12533_high_6 (Length: 266)

Name: NF12533_high_6
Description: NF12533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12533_high_6
NF12533_high_6
[»] chr7 (3 HSPs)
chr7 (19-258)||(44871883-44872122)
chr7 (112-252)||(44872090-44872230)
chr7 (127-236)||(44872040-44872149)
[»] chr3 (12 HSPs)
chr3 (50-253)||(47527797-47527997)
chr3 (18-258)||(47527495-47527738)
chr3 (31-258)||(47527646-47527870)
chr3 (19-107)||(47522235-47522323)
chr3 (19-242)||(47522169-47522389)
chr3 (19-131)||(47522301-47522413)
chr3 (113-253)||(47527389-47527529)
chr3 (46-239)||(47527925-47528115)
chr3 (112-258)||(47522127-47522273)
chr3 (146-252)||(47522227-47522333)
chr3 (31-98)||(47527844-47527911)
chr3 (60-135)||(47549704-47549782)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 44872122 - 44871883
Alignment:
Q  19 aatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44872122 aatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttc 44872023  T
Q  119 ttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44872022 ttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagagactgaaa 44871923  T
Q  219 gaatccaaggaagaagcagcagcatcaatttattcttctc 258  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44871922 gaatccaaggaagaagcagcagcatcaatttattcttctc 44871883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 112 - 252
Target Start/End: Complemental strand, 44872230 - 44872090
Alignment:
Q  112 caatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcg 211  Q
    |||||| ||| ||| ||||||||||||||   | || |||| ||||| ||||||||||||| ||||||||| |||||||| ||||||||||||| |||||    
T  44872230 caattttttcctctgcattacagttgaaaaaacgacagagaaaatccaaggaagcagtagcaagagcatttactttgtctgcattacagtcgaaggagcg 44872131  T
Q  212 actgaaagaatccaaggaagaagcagcagcatcaatttatt 252  Q
    || |  ||||||| |||||  ||||||| ||||||||||||    
T  44872130 accgggagaatccgaggaaacagcagcaacatcaatttatt 44872090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 44872149 - 44872040
Alignment:
Q  127 cattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaatccaa 226  Q
    ||||||||| ||| | || |||| |||||||||||||| ||| ||| | | || ||| |||| |||| |||||||||||||||| ||||| | ||||| |    
T  44872149 cattacagtcgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccga 44872050  T
Q  227 ggaagaagca 236  Q
    ||||| ||||    
T  44872049 ggaagcagca 44872040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 50 - 253
Target Start/End: Original strand, 47527797 - 47527997
Alignment:
Q  50 tttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccg 149  Q
    |||| |||| || |||||||  |||| |||||||  ||| || ||||||||| ||||||||   |||||||| ||||||||||||||||||| |||||||    
T  47527797 tttgtctccatttcagtcgattgagcgactgagagcatctgatgaagcagcagcaacaaca---atttcttcgtctccattacagttgaaagagcaaccg 47527893  T
Q  150 agagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaatccaaggaagaagcagcagcatcaattt 249  Q
    |||||||| ||||||||| |||  ||||||||||  ||||||||||||||||||||||||||||||  ||||| | |||||| ||||||| ||| |||||    
T  47527894 agagaatctgaggaagcattagtaagagcattttacttgtctccattacagtcgaaagagcgactgcgagaatgcgaggaagcagcagcaacattaattt 47527993  T
Q  250 attc 253  Q
    ||||    
T  47527994 attc 47527997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 47527495 - 47527738
Alignment:
Q  18 aaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaattt 117  Q
    ||||| |||||||||||||||||||||||||||| | |   |||||  ||  ||||||||| |||| |||||||||||| ||  ||||||||| |||| |    
T  47527495 aaatctgaggaaacagcagcaacatcaatttattcgtcctgtttactttctgaagagcaaccgagagaatccgaggaagaagtgacaacaacatcaatat 47527594  T
Q  118 cttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtag---ctagagcattttctttgtctccattacagtcgaaagagcgact 214  Q
     ||  ||||||||||||| ||| | ||||| ||||||||||| |||||||| ||   | | | || ||||||||||||||||||||||||||||||||||    
T  47527595 attggtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtctccattacagtcgaaagagcgact 47527694  T
Q  215 gaaagaatccaaggaagaagcagcagcatcaatttattcttctc 258  Q
    || ||||||  |||||| |||||||  |||||| ||||| ||||    
T  47527695 gagagaatctgaggaagcagcagcaatatcaatatattcatctc 47527738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 258
Target Start/End: Original strand, 47527646 - 47527870
Alignment:
Q  31 cagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttcttcttctccatt 130  Q
    ||||| ||||| |||||| |||| |||| |||||||||||||||| ||||||| |||| |||||||||||| ||| | ||   || | ||| ||||||||    
T  47527646 cagcaacaacaacaatttctttgtctccattacagtcgaaagagcgactgagagaatctgaggaagcagcagcaatatca---atatattcatctccatt 47527742  T
Q  131 acagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaatccaaggaa 230  Q
    |||| |||||||||||||||  |||||||||| | ||||||| |||| |||||||||||||||||| |||||||  |||||||||| || |||  | |||    
T  47527743 acagctgaaagtgcaaccgaaggaatccgaggtatcagtagcaagaggattttctttgtctccatttcagtcgattgagcgactgagagcatctgatgaa 47527842  T
Q  231 gaagcagcagcatcaatttattcttctc 258  Q
    | ||||||| || |||||| ||| ||||    
T  47527843 gcagcagcaacaacaatttcttcgtctc 47527870  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 47522235 - 47522323
Alignment:
Q  19 aatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaaca 107  Q
    |||| |||||||||||||||| ||||||||||| | |||||||||| |||||||||| || |||| ||||| ||||||||||| |||||    
T  47522235 aatctgaggaaacagcagcaatatcaatttattcgtctcctttacaatcgaaagagctaccgagagaatcccaggaagcagcagcaaca 47522323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 47522169 - 47522389
Alignment:
Q  19 aatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttc 118  Q
    ||||||||||||||| || |||| |||||| | || |||| || ||||||||| ||  || |||| |||| |||||| ||||| ||| | ||   ||||     
T  47522169 aatccgaggaaacagaaggaacaacaatttctctgtctccattgcagtcgaaaaagagaccgagagaatctgaggaaacagcagcaatatca---attta 47522265  T
Q  119 ttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaa 218  Q
    ||| ||||| ||||| | ||||| || ||||||||||||| ||||||||| ||| | | || | | || ||||||||| | ||||||||||  ||||| |    
T  47522266 ttcgtctcctttacaatcgaaagagctaccgagagaatcccaggaagcagcagcaacatcaatctattggtctccattgccgtcgaaagagaaactgaga 47522365  T
Q  219 gaatccaaggaagaagcagcagca 242  Q
    |||||| |||| ||||||||||||    
T  47522366 gaatccgaggaggaagcagcagca 47522389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 47522301 - 47522413
Alignment:
Q  19 aatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttc 118  Q
    ||||| ||||| |||||||||||||||| |||| | |||| || | |||||||||| |||||||| |||||||||| | |||| || ||||  |||||||    
T  47522301 aatcccaggaagcagcagcaacatcaatctattggtctccattgccgtcgaaagagaaactgagagaatccgaggaggaagcagcagcaactacaatttc 47522400  T
Q  119 ttcttctccatta 131  Q
    ||  |||||||||    
T  47522401 tttgtctccatta 47522413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 253
Target Start/End: Original strand, 47527389 - 47527529
Alignment:
Q  113 aatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcga 212  Q
    ||||||||  ||||||| ||||| ||||  ||  || ||||||||||||||||| | |||||||||||||||||| |||| | ||||| |||  ||||||    
T  47527389 aatttctttgtctccatcacagtcgaaaaagcgtcctagagaatccgaggaagctggagctagagcattttctttttctcaactacagccgacggagcga 47527488  T
Q  213 ctgaaagaatccaaggaagaagcagcagcatcaatttattc 253  Q
    | || | ||||  |||||  ||||||| |||||||||||||    
T  47527489 cagagaaaatctgaggaaacagcagcaacatcaatttattc 47527529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 239
Target Start/End: Original strand, 47527925 - 47528115
Alignment:
Q  46 tttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgca 145  Q
    |||| ||| |||| |||||||||||||||| |||| || ||| ||||||||||||| |||||  |   |||| ||| | |||||||||| | |||| |||    
T  47527925 tttacttgtctccattacagtcgaaagagcgactgcgagaatgcgaggaagcagcagcaacatta---atttattcgtttccattacagataaaagagca 47528021  T
Q  146 accgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaatccaaggaagaagcagca 239  Q
    |  ||||||||| || ||||||| | | | | || ||||| |||||||||||||| ||||| ||| ||  || |||||| |||||| |||||||    
T  47528022 atggagagaatctgatgaagcagcatcaaaaacaatttctctgtctccattacagccgaaaaagcaaccaaatgaatccgaggaagcagcagca 47528115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 258
Target Start/End: Original strand, 47522127 - 47522273
Alignment:
Q  112 caatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcg 211  Q
    ||||||||||  ||||| |||||||||||  |  | ||||||||||||||||| ||| ||  | | || ||||| |||||||||| ||||||||| || |    
T  47522127 caatttcttcgcctccactacagttgaaaaagagatcgagagaatccgaggaaacagaaggaacaacaatttctctgtctccattgcagtcgaaaaagag 47522226  T
Q  212 actgaaagaatccaaggaagaagcagcagcatcaatttattcttctc 258  Q
    || || ||||||  |||||  |||||||  |||||||||||| ||||    
T  47522227 accgagagaatctgaggaaacagcagcaatatcaatttattcgtctc 47522273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 252
Target Start/End: Original strand, 47522227 - 47522333
Alignment:
Q  146 accgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaatccaaggaagaagcagcagcatca 245  Q
    |||||||||||| |||||| ||| ||| | | || ||| || |||||| ||||| |||||||||| || || ||||||| |||||| ||||||| |||||    
T  47522227 accgagagaatctgaggaaacagcagcaatatcaatttattcgtctcctttacaatcgaaagagctaccgagagaatcccaggaagcagcagcaacatca 47522326  T
Q  246 atttatt 252  Q
    || ||||    
T  47522327 atctatt 47522333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 47527844 - 47527911
Alignment:
Q  31 cagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagca 98  Q
    ||||||||||| |||||| || | |||| ||||||| ||||||||||| |||| |||| |||||||||    
T  47527844 cagcagcaacaacaatttcttcgtctccattacagttgaaagagcaaccgagagaatctgaggaagca 47527911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 47549704 - 47549782
Alignment:
Q  60 ttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaa---caacagcaatttcttcttctccattacagt 135  Q
    |||||||| ||| ||| || |||| |||||||||||| | ||||||   ||||| |||||||||| |||||||||||||    
T  47549704 ttacagtcaaaaaagcgacagagagaatccgaggaaggaacaacaataacaacaacaatttcttcatctccattacagt 47549782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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