View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12533_low_1 (Length: 793)
Name: NF12533_low_1
Description: NF12533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12533_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 748; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 10 - 777
Target Start/End: Complemental strand, 56169285 - 56168518
Alignment:
| Q |
10 |
gacatcagcaaatttacataaaataggttagcacagcctagagaaagtgataaacaaaatcataaaagacaaacactaaagtgaaatgataaaaagcatt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56169285 |
gacatcagcaaatttacataaaataggttagcacagcctagagaaagtgataaacaaaatcataaaagacaaacactaaagtgaaatgataaaaagcatt |
56169186 |
T |
|
| Q |
110 |
atatcataataggcataagacaaacgttaatgccaaataacaagaccaatcaaaagattgtcatctaaaattatcaattcttgttagaaatataataaac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56169185 |
atatcataataggcataagacaaacgttaatgccaaataacaagaccaatcaaaagattgtcatctaaaattatcaattcttgttagaaatataataaac |
56169086 |
T |
|
| Q |
210 |
aggtagcaactctagtcaggcataacaatagcaatgacaatgatatcaggacaaaaggaatgccttaatcgaactttatacacgatcctatatataaccg |
309 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
56169085 |
aggtagcaactctagtcagccataacaatagcaatgacaatgatatcaggacaaaaggaatgccttaattgaactttatacacgatcctatatataaccg |
56168986 |
T |
|
| Q |
310 |
cacatattaggctcctaagcatcactagcaaaatgttcattgatattattacctgcaatacgcatatatgcctttaaacctcaaaagaaagttctctaat |
409 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
56168985 |
cacatattaggctcctaagcatcactagtaaaatgttcattgatattattacctgcaatacgcatatatgcctttaaacctcaaaagaaagttctttaat |
56168886 |
T |
|
| Q |
410 |
gggcaaaaacagtgtcatttcgcctaggtggtctgtcaggaatagatcctggcttgaatttggaagcttcatgccttgccaattcaggtggaacaggact |
509 |
Q |
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| T |
56168885 |
gggcaaaaacagtgtcatttcgcctaggtggtctgtcaggaatagatcctggcttgaatttggaagcttcatgccttgccaattcaggtggaacaggact |
56168786 |
T |
|
| Q |
510 |
gttactctgaatgagcatctgcttaagttcataaaagacatcagtgtcctgaagagtcaggaatgttgtagccacacctgtctttcctgcacgaccagta |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56168785 |
gttactctgaatgagcatctgcttaagttcataaaagacatcagtgtcctgaagagtcaggaatgttgtagccacacctgtctttcctgcacgaccagta |
56168686 |
T |
|
| Q |
610 |
cgcccaatacgatgggtgtacatttcaatattcccaggcatatcatagttgataacatgagccacatcaggaatgtcaataccacgtccagcaacatcgg |
709 |
Q |
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| T |
56168685 |
cgcccaatacgatgggtgtacatttcaatattcccaggcatatcatagttgataacatgagccacatcaggaatgtcaataccacgtccagcaacatcgg |
56168586 |
T |
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| Q |
710 |
ttgcaacaagcacattatatctcttggtcctaaatccttcaagactaatctccctctgatcctgtgat |
777 |
Q |
| |
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| T |
56168585 |
ttgcaacaagcacattatatctcttggtcctaaatccttcaagactaatctccctctgatcttgtgat |
56168518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 103 - 777
Target Start/End: Original strand, 706522 - 707192
Alignment:
| Q |
103 |
aagcattatatcataataggcataagacaaacgttaatgccaaataacaagaccaatcaaaagattgtcatctaaaattatcaattcttgttagaaatat |
202 |
Q |
| |
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|||||||||||||||||| |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
706522 |
aagcattatatcataataagcataaaacaaagattaacaccaaataacaagaccaatcaaaagattgtcatctaaaactatcaattcttgttagaaatat |
706621 |
T |
|
| Q |
203 |
aataaacaggtagcaactctagtcaggcataacaatagcaatgacaatgatatcaggacaaaaggaatgccttaatcgaactttatacacgatcctatat |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || ||||| |||||||||| |
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| T |
706622 |
aataaacaggtagcaactctagtcaggcataacaatagcaatggcaatgatatcaggacaaaaggaatgccttaattgaatttcatacaagatcctatat |
706721 |
T |
|
| Q |
303 |
ataaccgcacatattaggctcctaagcatcactagcaaaatgttcattgatattattacctgcaatacgcatatatgcctttaaacctcaaaagaaagtt |
402 |
Q |
| |
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|||| |||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
706722 |
ataatcgcacatattaggctcctaagcatcacttgcaaaatattcattgatatt--tacctgcaatatgcatatatgcctttaaacctcaa--gaaagtt |
706817 |
T |
|
| Q |
403 |
ctctaatgggcaaaaacagtgtcatttcgcctaggtggtctgtcaggaatagatcctggcttgaatttggaagcttcatgccttgccaattcaggtggaa |
502 |
Q |
| |
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|||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
706818 |
ctctaatgggtaaaaacagtgtcgtttcgcctaggtggtctgtcgggaatagatcctggcttgaatttggaagcttcatgccttgccaattcatgtggaa |
706917 |
T |
|
| Q |
503 |
caggactgttactctgaatgagcatctgcttaagttcataaaagacatcagtgtcctgaagagtcaggaatgttgtagccacacctgtctttcctgcacg |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
706918 |
caggactgttactctgaatgagcatctgcttaagttcataaaagacatcagtgtcctgaagagtcaggaatgttgtagccacacccgtctttcctgcacg |
707017 |
T |
|
| Q |
603 |
accagtacgcccaatacgatgggtgtacatttcaatattcccaggcatatcatagttgataacatgagccacatcaggaatgtcaataccacgtccagca |
702 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
707018 |
gccggtacgcccaatacgatgggtgtacatttcaatattcccaggcatatcatagttgataacatgagccacatcaggaatgtcaataccacgtccagca |
707117 |
T |
|
| Q |
703 |
acatcggttgcaacaagcacattatatctcttggtcctaaatccttcaagactaatctccctctgatcctgtgat |
777 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
707118 |
acatcggttgcaacaagcacattatatctcttggtcctaaatccttcaagactaatttccctctgatcctgtgat |
707192 |
T |
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