View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12533_low_12 (Length: 237)
Name: NF12533_low_12
Description: NF12533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12533_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 43563934 - 43564135
Alignment:
| Q |
20 |
tgaacttagtcctcaaatcccttgtgaaagccttcaaaccatactccnnnnnnnctttacaacaaaatcttccacactcacttttttgaacaatactact |
119 |
Q |
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| T |
43563934 |
tgaacttagtcctcaaatcccttgtgaaagccttcaaaccatactcctttttttctttacaacaaaatcttccacactcacttttttgaacaatactact |
43564033 |
T |
|
| Q |
120 |
ttgttctccaccaaagagatcatcaatttcttttattaatttctcgatctttgactcaatttcagccaaatcagaactttcagatgaaattgcctcctgt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43564034 |
ttgttctccaccaaagagatcatcaatttcttttattaatttctcgatctttgactcaatttcagccaaatcagaactttcagatgaaattgcctcctgt |
43564133 |
T |
|
| Q |
220 |
ct |
221 |
Q |
| |
|
|| |
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|
| T |
43564134 |
ct |
43564135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 36431966 - 36432066
Alignment:
| Q |
97 |
tcacttttttgaacaatactactttgttctccaccaaagagatcatcaatttcttttattaatttctcgatctttgactcaatttcagccaaatcagaac |
196 |
Q |
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||||||||| || || |||||||| |||||||||||||||||||||||||||||| | ||||| || ||||||||||||||| |||||||||||||||| |
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| T |
36431966 |
tcactttttggagcaccactactttcttctccaccaaagagatcatcaatttctttgactaattgcttgatctttgactcaatctcagccaaatcagaac |
36432065 |
T |
|
| Q |
197 |
t |
197 |
Q |
| |
|
| |
|
|
| T |
36432066 |
t |
36432066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 36431913 - 36431955
Alignment:
| Q |
20 |
tgaacttagtcctcaaatcccttgtgaaagccttcaaaccata |
62 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36431913 |
tgaacttagtcctcaaatcccttgtgaaagccttcaatccata |
36431955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 43974591 - 43974491
Alignment:
| Q |
97 |
tcacttttttgaacaatactactttgttctccaccaaagagatcatcaatttcttttattaatttctcgatctttgactcaatttcagccaaatcagaac |
196 |
Q |
| |
|
||||||||| ||||| || ||||||||||||||||||||||||||| |||||| |||||| ||| | ||| ||||||||||| || ||||||||||||| |
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| T |
43974591 |
tcactttttggaacactatgactttgttctccaccaaagagatcatctatttctcttattacttttttgatatttgactcaatctctgccaaatcagaac |
43974492 |
T |
|
| Q |
197 |
t |
197 |
Q |
| |
|
| |
|
|
| T |
43974491 |
t |
43974491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 43974641 - 43974595
Alignment:
| Q |
20 |
tgaacttagtcctcaaatcccttgtgaaagccttcaaaccatactcc |
66 |
Q |
| |
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||||||||||||| | |||||||||||||||||||| ||||||||| |
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| T |
43974641 |
tgaacttagtcctaaggtcccttgtgaaagccttcaatccatactcc |
43974595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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