View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12533_low_5 (Length: 399)
Name: NF12533_low_5
Description: NF12533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12533_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 42087113 - 42087500
Alignment:
| Q |
1 |
ccttcctccatcatgagatgtctccaccatataatttagcttctgaacctgcgaggnnnnnnntaatcacacgggtaagcttaagttcaactcatttaat |
100 |
Q |
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| T |
42087113 |
ccttcctccatcatgagatgtttccaccatataacttagcttctgaacctgcgaggaaaaaaaaaatcacacggttaagcttaagttcaactcatttaat |
42087212 |
T |
|
| Q |
101 |
taatcgagcctaatacgaagcttgagtaaataaataaacaaacttaaccgaatattttgcgagttgagcatgaatagttcacgaatagctgaactcgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42087213 |
taatcgagcctaatacgaagcttgagtaaataaataaacaaacttaaccgaatattttgcgagttgagcatgaatagttcacgaatagctgaactcgttt |
42087312 |
T |
|
| Q |
201 |
aaattaagctgtttatcgagacacaactctagttatgttacaatataattgcaagaaccaaagtaccaacttacctctgattgcaaagactctttctctt |
300 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42087313 |
aaattaaactgtttatcgagacacaactatagttatgttacaatataattgcaagaaccaaagtactaacttacctctgattgcaaagactctttctctt |
42087412 |
T |
|
| Q |
301 |
ccttaaggcactgaaacttagaagctaaattatcataatcatctttgagttttctgtattcttgttctatcctttttgatgtccatct |
388 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42087413 |
ccttaaggcactgaaacttagaagctaaattatcatattcatctttgagttttctgtattcttgttctatcctttttgatttccatct |
42087500 |
T |
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