View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12533_low_9 (Length: 251)
Name: NF12533_low_9
Description: NF12533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12533_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 43410369 - 43410127
Alignment:
| Q |
1 |
aaaatattatccttttgataggaatatattaaatatttctagcatagaagttcctatttggagccttgcagattatagttgagtgttgaaccaccaatta |
100 |
Q |
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| T |
43410369 |
aaaatattatccttttgataggaatatattaaatatttctagcatagaagttcctatttggagccttgcagattatagttgagtgttgaaccaccaatta |
43410270 |
T |
|
| Q |
101 |
agaagttttagactcttaacagtttgaatcaaactccaatcctgacgtcgtcacgattaaaaatttctagcctgtgtttaagtttttcagattctcattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43410269 |
agaagttttagactcttaacagtttgaatcaaactccaatcctgacgtcgtcacgattaaaaatttctagcctgtgtttaagtttttcagattctcattt |
43410170 |
T |
|
| Q |
201 |
tccgatattaagatgtaatcttgtatgctggttttgtctctgc |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43410169 |
tccgatattaagatgtaatcttgtatgctggttttgtctctgc |
43410127 |
T |
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