View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12534_high_3 (Length: 492)
Name: NF12534_high_3
Description: NF12534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12534_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Complemental strand, 37697812 - 37697351
Alignment:
| Q |
18 |
agaaggcttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaaacaacaatgattgctgcaacgacaaatggaagggt |
117 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37697812 |
agaagccttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaaacaacaatgactgctgcaacgacaaatggaagggt |
37697713 |
T |
|
| Q |
118 |
gtctcatgcgactcagaccgagtcgccaaccttggtctcgacgacctcaacctccctaaacctgttccatttccaccctccatcactaacctccctttcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37697712 |
gtctcatgcgactcagaccgagtcgccaaccttggtctcgacgacctcaacctccctaaacctgttccatttccaccctccatcactaacctcccttttc |
37697613 |
T |
|
| Q |
218 |
ttgacgacttctctctctcccgcatccccaacctcgtcggcactatcccaccgtccatctccaaactcaccaatcttgagtacctcaccctcagccatac |
317 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37697612 |
ttgacgatttctctctctcccgcatccccaacctcgtcggcactatcccaccgtccatctccaaactcaccaatcttgattacctcaccctcagccatac |
37697513 |
T |
|
| Q |
318 |
cataccagcatctccggcgagataccaaacactctttcaaagatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctccctg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37697512 |
cataccagcatctccggcgagataccaaacactctttcaaatatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctccctg |
37697413 |
T |
|
| Q |
418 |
cttcactctcctctctccctaagcttgaaataatctctttagacggcaaccaactcacaggt |
479 |
Q |
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| T |
37697412 |
cttcactctcctcgctccctaagcttgaaataatctctttagacggcaaccaactcacaggt |
37697351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 26 - 479
Target Start/End: Original strand, 38013277 - 38013735
Alignment:
| Q |
26 |
tactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaaacaacaatgattgctgcaacgacaaatggaagggtgtctcatg |
125 |
Q |
| |
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||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||| || || ||||||||| |||||||||| ||||||||||| |
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| T |
38013277 |
tactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatccaaaca-ca--gactgctgcaacaacaaatggaaaggtgtctcatg |
38013373 |
T |
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| Q |
126 |
cgactcagac------------cgagtcgccaaccttggtctcgacgacctcaacctccctaaacctgttccatttccaccctccatcactaacctccct |
213 |
Q |
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| T |
38013374 |
caactcagacacacaaaccaaccgagtagaaaaccttgatctcgagaaccttgacctacctaaacctgttccaattccaccctccatcgctaacctccct |
38013473 |
T |
|
| Q |
214 |
ttccttgacgacttctctctctcccgcatccccaacctcgtcggcactatcc---caccgtccatctccaaactcaccaatcttgagtacctcaccctca |
310 |
Q |
| |
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|||||| | |||||||||||| |||||||||||| ||||||||||||| |||||||||||| |||||||| || ||| ||||||||||||||| |
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| T |
38013474 |
ttccttaccttactctctctctcccacatccccaaccttgtcggcactatcctcccaccgtccatcttcaaactca--aaacttaagtacctcaccctca |
38013571 |
T |
|
| Q |
311 |
gccataccataccagcatctccggcgagataccaaacactctttcaaagatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtccc |
410 |
Q |
| |
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| |||| |||| |||||||||||||||||||||||| || ||| |||| ||||| || ||||| ||||||||| |||||||||||| ||||||||| |
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| T |
38013572 |
g--atac---accaacatctccggcgagataccaaacaccctctcacagatcaaaacgctcttacgcatcgacttctacaacaacaaactaactggtccc |
38013666 |
T |
|
| Q |
411 |
ctccctgcttcactctcctctctccctaagcttgaaataatctctttagacggcaaccaactcacaggt |
479 |
Q |
| |
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||||| || ||||||||||||||||||| ||| | |||| |||| |||||||||||||||| |||| |
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| T |
38013667 |
ctccccactacactctcctctctccctaaccttacagaaatcactttggacggcaaccaactcaaaggt |
38013735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 321 - 427
Target Start/End: Original strand, 37994043 - 37994149
Alignment:
| Q |
321 |
accagcatctccggcgagataccaaacactctttcaaagatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctccctgctt |
420 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| ||| |||| ||||||||| || |||||| ||| | ||||||||||||||||||||||||| || | |
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| T |
37994043 |
accaacatctccggcgagatacctaacactctctcagagatcaaaaccctagtaaccatcgacatcagcgacaacaaactcactggtcccctccccgcat |
37994142 |
T |
|
| Q |
421 |
cactctc |
427 |
Q |
| |
|
||||||| |
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| T |
37994143 |
cactctc |
37994149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 37993755 - 37993802
Alignment:
| Q |
31 |
caaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggat |
78 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37993755 |
caaatcaaaaaacaatttggcaacccaaccaaactctcttcatgggat |
37993802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 37989560 - 37989616
Alignment:
| Q |
26 |
tactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaa |
82 |
Q |
| |
|
|||||||||| || ||||||||||||||||| | | ||||||||||||||||||||| |
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| T |
37989560 |
tactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaa |
37989616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 32 - 371
Target Start/End: Original strand, 25326178 - 25326518
Alignment:
| Q |
32 |
aaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaaacaacaatgattgctgcaacgacaaatggaagggtgtctcatgcgactc |
131 |
Q |
| |
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|||| ||||||||| | |||| |||||||||||| ||||||||| | |||| |||| ||| ||||||| | |||||||| | |||||| ||||||||| |
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| T |
25326178 |
aaattaaaaaagaactaggcagcccaaccaaactttcttcatggaacccaa-caac--tgactgctgcagccacaaatgggaaggtgtcctatgcgactc |
25326274 |
T |
|
| Q |
132 |
aga------ccgagtcgccaaccttggtctcgacgacctcaacctccctaaacctgttccatttccaccctccat---cactaacctccctttccttgac |
222 |
Q |
| |
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| | ||| ||| ||| |||| |||| ||||||||||||||| |||| |||| | ||||||||||||| |||||||||||||||| | || |
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| T |
25326275 |
acaaacctaccgtgtcaacaagcttgatctcttcgacctcaacctccccaaacacgttcaaattccaccctccatattcactaacctccctttcataaac |
25326374 |
T |
|
| Q |
223 |
gacttctctctctcccgcatccccaacctcgtcggcactatcccaccgtccatctccaaactcaccaatcttgagtacctcaccctcagccataccatac |
322 |
Q |
| |
|
||||| || | ||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||| ||||| | |||| | || |
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| T |
25326375 |
tttctctctatcgacaacatccccaacctcgttggcactatcccgccttccatctccaaactcaccaaacttgaggtcctcatcatcag-----cggcac |
25326469 |
T |
|
| Q |
323 |
cagcatctccggcgagataccaaacactctttcaaagatgaaaacccta |
371 |
Q |
| |
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|||||||||||||||||||||||| | || ||| |||| ||||||||| |
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|
| T |
25326470 |
aagcatctccggcgagataccaaactcactctcacagattaaaacccta |
25326518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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