View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12534_high_5 (Length: 455)
Name: NF12534_high_5
Description: NF12534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12534_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 27011832 - 27011521
Alignment:
| Q |
14 |
gaaggagtgaaggatggtgatgatggttgagaagagagagttccatgatattggtctgttctttgttaattaataatctagagtttataattagcttttt |
113 |
Q |
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| T |
27011832 |
gaagaagtgaaggatggtgatgatggttgagaagagagagttccatgatattggtttgttctttgttaattaataatctagagtttataattagcttttc |
27011733 |
T |
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| Q |
114 |
atacatatttatttttctttactttggtttgagaggaaagagaatatagagagagaggataacgtagttgattctatccacaannnnnnnnnnnngaagc |
213 |
Q |
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| T |
27011732 |
atacatatttatttttctttactttggtttgagaggaaagagaatatagagagagaggataacgtagttgattctatccacaatttttattttttgaagc |
27011633 |
T |
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| Q |
214 |
atttaagaaatcatagaacttt----actccaggactttaagttttggattggatatgtcacgaacaaaaccatcaatattatgttttataatcttaata |
309 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27011632 |
atttaagaaatcatagaactttactcactccaggactttaagttttgggttggatatgtcacgaacaaaaccatcaatattatgttttataatcttaata |
27011533 |
T |
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| Q |
310 |
ggttctgtattt |
321 |
Q |
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|||||||||||| |
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| T |
27011532 |
ggttctgtattt |
27011521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 346 - 440
Target Start/End: Complemental strand, 27011502 - 27011408
Alignment:
| Q |
346 |
ttattaggataatgggaaattggacacatgtcaaagtttttaaattgtgcatattatgtgtttggacattctcgtttcatgggtgaggttcaagt |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| |
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| T |
27011502 |
ttattaggataatgggaaattggacacatgtcaaagtttttaaattgtgcatattatgtatttggacattctcgtttcatggatgaggtttaagt |
27011408 |
T |
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