View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12534_low_2 (Length: 520)
Name: NF12534_low_2
Description: NF12534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12534_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 480
Target Start/End: Original strand, 17280143 - 17280604
Alignment:
| Q |
17 |
aatttaagcatcaaattgttgtataaatttattgatatatattgcaggagcctgagtcaagtgcatgctttcttagtgacatatcaaatgaagaaaacga |
116 |
Q |
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| T |
17280143 |
aatttaagcatcaaatcattgtataaatttattgctatatattgcaggagcctgagtcaagtgcatgctttcttagtgacatatcaaatgaagaaaacga |
17280242 |
T |
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| Q |
117 |
ttgtagaactaccaaatatctaaatctcccattccctttcagttctctgataattccaatggtgcatagtgatcaaggcataacacatttttcttcacca |
216 |
Q |
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| T |
17280243 |
ttgtagaactaccaaatatctaaatctcccattccctttcagttctctgataattccgatggtgcatagtgatcaaggcataacacatttttcttcacca |
17280342 |
T |
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| Q |
217 |
aatacgacaaataatcatgatgtggattctagttctataaaatctcatgggagagattatataaacttggacctatcaatttgannnnnnnnnnnnnnnn |
316 |
Q |
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||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17280343 |
aatgagacaaataatcatgatgtagattctagttctataaaatctcatgggagagattatataaacttggacctatcaatttgaatatatataaatatat |
17280442 |
T |
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| Q |
317 |
nagatgtagccttttacatgtattaatacatatcattatactcttattagataatgttatattatattaagggtagtttagtcttttt-atgtttagtat |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
17280443 |
aagatgtagccttttacatgtattaatacatatcattatactcttattagataatgttatattatattaagggtagtttagtctttttcatgtttagtat |
17280542 |
T |
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| Q |
416 |
taatttcctttctgtttgtcttgtattgtgtacattaagactttgcaatctattggaaatctagc |
480 |
Q |
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||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
17280543 |
taa-ttcctttctgtttgtcttgtat--tgtacgttaagactttgcaatctattggaaatctagc |
17280604 |
T |
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