View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12534_low_6 (Length: 364)
Name: NF12534_low_6
Description: NF12534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12534_low_6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 35171550 - 35171896
Alignment:
| Q |
19 |
aacggttaggtgaaggaataagctgcaatgaacaaatgtactccataaagatgcaggatcctaaaagttctgattctacagtcaccgaatcaagtcccca |
118 |
Q |
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| T |
35171550 |
aacggttagatgaaggaataagctgcaatgaacaaattgactccataaagatgcaggatcctaaaagttctgattctacagtcaccgaatcaagtcccca |
35171649 |
T |
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| Q |
119 |
aattatacatcaatgttgtttacaaagggcaaatgaaatgacatgtattcggaatcaactttcagatattgaaatcaaacaggaaaacatgatgcatcaa |
218 |
Q |
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| T |
35171650 |
aattacacatcaatgttgtttacaaagggcaaatgaaatgacttgtattcggaatcaactttcagatattgaaatcaaacaggaaaacatgatgcatcaa |
35171749 |
T |
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| Q |
219 |
ttacaggtattaatattctacatactaacatatatacatgtctatttgtaagtttttgagtcttgctgctgctagatactctcctacatacatacagtag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35171750 |
ttacaggtattaatattctacatactaacatatatacatgtctatttgtaagtttttgagtcttgctgctgctagatactctcctacatacatacagtag |
35171849 |
T |
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| Q |
319 |
-tcatttattgaacattatcatccttttttactttccacaacctgtg |
364 |
Q |
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| T |
35171850 |
ttcatttatttaacattatcatccttttttactttccacaacctgtg |
35171896 |
T |
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