View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12534_low_9 (Length: 315)
Name: NF12534_low_9
Description: NF12534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12534_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 141 - 285
Target Start/End: Original strand, 785272 - 785416
Alignment:
| Q |
141 |
ctcagagggagctatataaatctatcaagcctgatgaatgttattggagcataggtatgaagctactaaattgtgtttgtagaaaatccttttttaggtg |
240 |
Q |
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| T |
785272 |
ctcagggggagctatataaatctatcaagcctgatgattgttattggagcataggtatgaaactactaaatttcttttgtggaaaatccctttttaagtg |
785371 |
T |
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| Q |
241 |
accataattcattagcatcatgattgatttgatatttttaaattt |
285 |
Q |
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| T |
785372 |
accatagctcgttaggatcatgatggatttgatatttttaaattt |
785416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 770783 - 770695
Alignment:
| Q |
141 |
ctcagagggagctatataaatctatcaagcctgatgaatgttattggagcataggtatgaagctactaaattgtgtttgtagaaaatcc |
229 |
Q |
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| T |
770783 |
ctcagagggagctatataaatctatcaagcctgatgaatgttattggagcataggtatgaaactactaaattgtgtttgtagaaaatcc |
770695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 780584 - 780690
Alignment:
| Q |
147 |
gggagctatataaatctatcaagcctgatgaatgttattggagcataggtatgaagc---tactaaattgtgtttgtagaaaatccttttttaggtgacc |
243 |
Q |
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| T |
780584 |
gggagctgtataaatttatcaaggctgatgaatgttattggagcataggtatttgactattactaaattgcatttgtggaaaatccttttttatgtgacc |
780683 |
T |
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| Q |
244 |
ataattc |
250 |
Q |
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| T |
780684 |
ataattc |
780690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 780379 - 780424
Alignment:
| Q |
11 |
caaagggcagccaccaattattgatgtaagcttttactcagttata |
56 |
Q |
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| T |
780379 |
caaagggcagccaccaattattgatgtaagcttttactcagttata |
780424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 770966 - 770921
Alignment:
| Q |
11 |
caaagggcagccaccaattattgatgtaagcttttactcagttata |
56 |
Q |
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| T |
770966 |
caaagggcagccaccaattattgatgtaagcatttactcagttata |
770921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 785074 - 785110
Alignment:
| Q |
11 |
caaagggcagccaccaattattgatgtaagcttttac |
47 |
Q |
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| T |
785074 |
caaagggcagccaccaattattgatgtaagcttttac |
785110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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