View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12535_high_1 (Length: 526)

Name: NF12535_high_1
Description: NF12535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12535_high_1
NF12535_high_1
[»] chr7 (10 HSPs)
chr7 (18-520)||(41605273-41605771)
chr7 (77-256)||(43970006-43970186)
chr7 (123-256)||(29460346-29460480)
chr7 (104-243)||(513843-513983)
chr7 (110-169)||(31802462-31802521)
chr7 (99-244)||(41147740-41147886)
chr7 (99-169)||(12350761-12350831)
chr7 (106-169)||(27745755-27745818)
chr7 (131-209)||(42562037-42562115)
chr7 (125-169)||(18221494-18221538)
[»] chr5 (6 HSPs)
chr5 (77-208)||(13020906-13021037)
chr5 (77-208)||(13092430-13092561)
chr5 (106-256)||(10813082-10813233)
chr5 (99-244)||(23151255-23151401)
chr5 (99-169)||(28499162-28499232)
chr5 (130-209)||(5173505-5173584)
[»] chr1 (9 HSPs)
chr1 (342-486)||(27123384-27123528)
chr1 (104-244)||(33978131-33978272)
chr1 (105-169)||(27643394-27643458)
chr1 (189-257)||(317371-317440)
chr1 (104-169)||(39501116-39501181)
chr1 (120-249)||(7386671-7386801)
chr1 (105-156)||(20129627-20129678)
chr1 (106-256)||(28037638-28037789)
chr1 (131-251)||(49508559-49508680)
[»] scaffold0996 (1 HSPs)
scaffold0996 (104-244)||(1497-1638)
[»] chr4 (7 HSPs)
chr4 (109-254)||(54421348-54421494)
chr4 (130-246)||(43733927-43734044)
chr4 (106-169)||(21257039-21257102)
chr4 (99-244)||(32499532-32499678)
chr4 (104-169)||(42327927-42327992)
chr4 (106-222)||(5185452-5185568)
chr4 (119-169)||(38761409-38761459)
[»] chr8 (6 HSPs)
chr8 (107-169)||(16484179-16484241)
chr8 (104-169)||(11629491-11629556)
chr8 (104-169)||(9180755-9180820)
chr8 (104-169)||(34752714-34752779)
chr8 (131-224)||(10394650-10394743)
chr8 (131-246)||(5896259-5896375)
[»] chr2 (7 HSPs)
chr2 (108-257)||(36756892-36757042)
chr2 (119-250)||(37670652-37670784)
chr2 (104-169)||(10748041-10748106)
chr2 (135-257)||(17737813-17737935)
chr2 (119-169)||(14786013-14786063)
chr2 (131-169)||(30928234-30928272)
chr2 (140-169)||(14435877-14435906)
[»] chr3 (6 HSPs)
chr3 (119-249)||(29210806-29210933)
chr3 (106-256)||(52964087-52964238)
chr3 (99-244)||(2497056-2497198)
chr3 (119-250)||(4741533-4741665)
chr3 (106-256)||(54548264-54548415)
chr3 (107-212)||(51140152-51140257)
[»] scaffold0067 (1 HSPs)
scaffold0067 (99-244)||(10933-11079)
[»] chr6 (2 HSPs)
chr6 (104-169)||(10158979-10159044)
chr6 (106-250)||(16863234-16863379)
[»] scaffold0024 (1 HSPs)
scaffold0024 (135-245)||(69002-69113)


Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 520
Target Start/End: Original strand, 41605273 - 41605771
Alignment:
Q  18 agatatgttccaaatcaataaaataatattatgaattaaggtgagctcagttagataaaacaatataggaatctattgttagataaacccgactttatag 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  41605273 agatatgttccaaatcaataaaataataatatgaattaaggtgagctgagttagataaaacaatataggaatctattgttagataaatccgactttgtag 41605372  T
Q  118 ggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataatgtatcatctac 217  Q
     |||||||||| ||||| | ||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||| |||||||    
T  41605373 tgtcgtatgtttagaggtaggcaaataaggttgctcatagtattgctagagcgtccttatccaatctcaacccccatattttttataatgtaccatctac 41605472  T
Q  218 tttgtacccttgattatgaatgaaatgcattaatcttgctcgaacaaaaaatattaaggtgagctcagttgtaatcacaacacttactgaaagtccaatg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||    
T  41605473 tttgtacccttgattatgaatgaaatgcattaatcttgctcgaacaaaaaatattaagg----ctcagttgtaatcacaacacttactgaaagtccaatg 41605568  T
Q  318 gagaggcaggccaatgagggacgaaatcaggcaaaggattacaaatgagtttcaagaaatctctccaacagaacacggagtcttttgtttgactgaaact 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41605569 gagaggcaggccaatgagggacgaaatcaggcaaaggattacaaatgagtttcaagaaatctctccaacagaacacggagtcttttgtttgactgaaact 41605668  T
Q  418 ggtcccatatctaacagctgctctcatatcagttgtcatatacttagctctctcctccaatggaagatcgaagaaccttcctgcaacatctgtgctcctc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  41605669 ggtcccatatctaacagctgctctcatatcagttgtcatatacttagctctctcctccaatggaagatcgaagaaccttcctgcaacatctatgctgctc 41605768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 77 - 256
Target Start/End: Original strand, 43970006 - 43970186
Alignment:
Q  77 acaatataggaatctattgttagataaacccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgccctta 176  Q
    ||||| ||| ||||||||||||||||||||||||||||||| ||| |||||||  ||||||||||||||||||||||||||||||||||||||| |||||    
T  43970006 acaatgtagaaatctattgttagataaacccgactttatagtgtcatatgttcgtaggcaagcaaataaggttgctcatagtattgctagagcgtcctta 43970105  T
Q  177 ttcaatcttaacccccatattttttataatgtatcatctactttgtaccc-ttgattatgaatgaaatgcattaatcttgc 256  Q
    | ||||| || |||||||||||| ||| ||||| |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  43970106 tccaatcctagcccccatattttctatgatgtaccatctactttgtaccctttgattatgaacgaaatgcattaatcttgc 43970186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 123 - 256
Target Start/End: Complemental strand, 29460480 - 29460346
Alignment:
Q  123 tatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataatgtatcatctactttgt 222  Q
    ||||||| |||| |||| ||||||||||| |||||||||||||||||   |||||| ||||||| |||||||||||| ||| ||||| |||||||||| |    
T  29460480 tatgttcggaggaaagccaataaggttgcccatagtattgctagagctttcttatttaatcttatcccccatattttctatgatgtaccatctactttat 29460381  T
Q  223 accc-ttgattatgaatgaaatgcattaatcttgc 256  Q
    |||| || ||||||||||||||| |||||| ||||    
T  29460380 accctttaattatgaatgaaatgtattaattttgc 29460346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 243
Target Start/End: Original strand, 513843 - 513983
Alignment:
Q  104 acccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttat 203  Q
    |||||||||| ||| ||||||||||  ||||||||| |||| ||||||||||||||||||||||||  ||||||   ||| ||||| |||||||||| ||    
T  513843 acccgactttgtagtgtcgtatgtttggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctaacctccatatttttaat 513942  T
Q  204 aatgtatcatctactttgtac-ccttgattatgaatgaaat 243  Q
      |||| | |||||||||||| |||| |||| |||||||||    
T  513943 gttgtaccttctactttgtactccttaattacgaatgaaat 513983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 31802462 - 31802521
Alignment:
Q  110 ctttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagc 169  Q
    |||| ||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  31802462 ctttgtagtgtcgtatgttcggaggcaagctaataaggttgctcatagtattgctagagc 31802521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 244
Target Start/End: Original strand, 41147740 - 41147886
Alignment:
Q  99 gataaacccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattt 198  Q
    |||||||||||||||  || ||||||||||  ||||||||||||||  |||||||||||||||||| ||||  |  |||   ||| || |||||||||||    
T  41147740 gataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccatattt 41147839  T
Q  199 tttataatgtatcatctactttgtacc-cttgattatgaatgaaatg 244  Q
    || || ||||||   |||||||||||| | | |||||||||||||||    
T  41147840 ttcatcatgtattgcctactttgtaccgcctaattatgaatgaaatg 41147886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 12350831 - 12350761
Alignment:
Q  99 gataaacccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagc 169  Q
    |||||||||||||||  || ||||||||||  ||||||||||||||  |||||||||||||||||| ||||    
T  12350831 gataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatattgttgctcatagtattgctcgagc 12350761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 27745818 - 27745755
Alignment:
Q  106 ccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagc 169  Q
    ||||||||| || ||||| |||| ||||| |||| |||||||||||||||||||| ||||||||    
T  27745818 ccgactttacagtgtcgtttgttaagaggtaagctaataaggttgctcatagtatcgctagagc 27745755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 42562037 - 42562115
Alignment:
Q  131 gaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataatgta 209  Q
    |||||||||||||||||||| ||||  |||  | |||||  ||||||  |||||||||||||||||||||||| |||||    
T  42562037 gaggcaagcaaataaggttgttcattctataaccagagcatccttatctaatcttaacccccatattttttatgatgta 42562115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 18221538 - 18221494
Alignment:
Q  125 tgttcagaggcaagcaaataaggttgctcatagtattgctagagc 169  Q
    |||| |||||||||| |||||||||||||||| ||||||||||||    
T  18221538 tgttaagaggcaagctaataaggttgctcatactattgctagagc 18221494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 77 - 208
Target Start/End: Complemental strand, 13021037 - 13020906
Alignment:
Q  77 acaatataggaatctattgttagataaacccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgccctta 176  Q
    ||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||    
T  13021037 acaatgtaggaatctattgttagataaacccgactttgtagtgtcgtatgttcggaggcaagcaaataaggttgcttatagtattgctagagcgtcctta 13020938  T
Q  177 ttcaatcttaacccccatattttttataatgt 208  Q
    | ||||| ||||||||||||||| ||| ||||    
T  13020937 tccaatcctaacccccatattttctatgatgt 13020906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 77 - 208
Target Start/End: Complemental strand, 13092561 - 13092430
Alignment:
Q  77 acaatataggaatctattgttagataaacccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgccctta 176  Q
    ||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||| | |||    
T  13092561 acaatgtaggaatctattgttagataaacccgactttgtagtgtcgtatgttcggaggcaagcaaataaggttgcttatagtattgctagagcgtcgtta 13092462  T
Q  177 ttcaatcttaacccccatattttttataatgt 208  Q
    | ||||| ||||||||||||||| ||| ||||    
T  13092461 tccaatcctaacccccatattttctatgatgt 13092430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 256
Target Start/End: Complemental strand, 10813233 - 10813082
Alignment:
Q  106 ccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataa 205  Q
    ||||||||| || ||| ||| ||| ||||||||| |||| ||||||||||||||| ||||||||  ||||||   ||| || ||||||| |||||||||     
T  10813233 ccgactttaaagtgtcatatattcggaggcaagctaatagggttgctcatagtatagctagagcttccttatctcatcctagcccccatcttttttatag 10813134  T
Q  206 tgtatcatctactttgtac-ccttgattatgaatgaaatgcattaatcttgc 256  Q
    |||| | || ||||||||| | ||| |  |||||||||||||||||| ||||    
T  10813133 tgtaccttcaactttgtactctttgttcttgaatgaaatgcattaattttgc 10813082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 244
Target Start/End: Original strand, 23151255 - 23151401
Alignment:
Q  99 gataaacccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattt 198  Q
    |||||||||||||||  || ||||||||||  ||||||||||||||  |||||||||||||||||| ||||  |  |||   ||| || |||||||||||    
T  23151255 gataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccatattt 23151354  T
Q  199 tttataatgtatcatctactttgtacc-cttgattatgaatgaaatg 244  Q
    || || ||||||   |||||||||||| | | |||||||||||||||    
T  23151355 ttcatcatgtattgcctactttgtaccgcctaattatgaatgaaatg 23151401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 28499162 - 28499232
Alignment:
Q  99 gataaacccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagc 169  Q
    |||||||| ||||||| || ||||||||||  ||||||||||||||  |||||||||||||||||| ||||    
T  28499162 gataaacctgactttacagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagc 28499232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 5173505 - 5173584
Alignment:
Q  130 agaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataatgta 209  Q
    |||||||||||||||| || | |||||| |||||||||||  | ||||  ||||| ||||||||| |||||||| |||||    
T  5173505 agaggcaagcaaataaagtagttcatagcattgctagagcctctttatctaatctcaacccccatgttttttatgatgta 5173584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 342 - 486
Target Start/End: Complemental strand, 27123528 - 27123384
Alignment:
Q  342 aatcaggcaaaggattacaaatgagtttcaagaaatctctccaacagaacacggagtcttttgtttgactgaaactggtcccatatctaacagctgctct 441  Q
    ||||||||| |||||  || ||||||||||||||||||||||||||||||||   ||||||||||||||| || || || ||||||| ||| ||||||||    
T  27123528 aatcaggcagaggatggcatatgagtttcaagaaatctctccaacagaacactttgtcttttgtttgactaaagcttgttccatatcgaactgctgctct 27123429  T
Q  442 catatcagttgtcatatacttagctctctcctccaatggaagatc 486  Q
    |||||||| |||||| |||||  |||| ||||| |||||||||||    
T  27123428 catatcagatgtcatgtacttgcctctttcctcaaatggaagatc 27123384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 104 - 244
Target Start/End: Complemental strand, 33978272 - 33978131
Alignment:
Q  104 acccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttat 203  Q
    |||||||||| ||| ||| ||||||| ||||||||| |||| ||||||||||||||||||||||||  ||||||   ||| || ||||||||||||| ||    
T  33978272 acccgactttgtagtgtcatatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccccatatttttaat 33978173  T
Q  204 aatgtatcatctactttgtac-ccttgattatgaatgaaatg 244  Q
      |||| | |||||||||||| |||| |||||||||||||||    
T  33978172 gttgtaccttctactttgtactccttaattatgaatgaaatg 33978131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 27643458 - 27643394
Alignment:
Q  105 cccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagc 169  Q
    |||||||||| || ||||| |||| |||||||||| |||||||||||||||||||||||||||||    
T  27643458 cccgactttacagtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagc 27643394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 317440 - 317371
Alignment:
Q  189 ccccatattttttataatgtatcatctactttgtaccctt-gattatgaatgaaatgcattaatcttgct 257  Q
    |||||||||| | || ||||| |||||||||||||| ||| |||||| ||||||||||||||||||||||    
T  317440 ccccatatttgtcatgatgtaccatctactttgtactctttgattataaatgaaatgcattaatcttgct 317371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 39501116 - 39501181
Alignment:
Q  104 acccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagc 169  Q
    |||||||||| ||| ||||||||||  ||||||||||||||  |||||| ||||||||||||||||    
T  39501116 acccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgcttatagtattgctagagc 39501181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 249
Target Start/End: Original strand, 7386671 - 7386801
Alignment:
Q  120 tcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataatgtatcatctactt 219  Q
    |||| ||||| ||||||||||||||| || |||||||| |||||||||||  | ||||  |||| || ||||||| |||||||| |||||   | || ||    
T  7386671 tcgtttgttccgaggcaagcaaataaagtagctcatagcattgctagagcctctttatctaatcctagcccccatgttttttatgatgtacactttaatt 7386770  T
Q  220 tgtac-ccttgattatgaatgaaatgcatta 249  Q
    ||||| | ||||| |||||||||||| ||||    
T  7386771 tgtactctttgatcatgaatgaaatgaatta 7386801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 20129627 - 20129678
Alignment:
Q  105 cccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcata 156  Q
    ||||||||| ||| ||||||| ||| ||||||||| ||||||||||||||||    
T  20129627 cccgactttgtagtgtcgtatattcggaggcaagctaataaggttgctcata 20129678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 256
Target Start/End: Original strand, 28037638 - 28037789
Alignment:
Q  106 ccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataa 205  Q
    ||||||||| || ||||||| ||  ||||||||  |||| ||||||||||||||| ||||||||  | ||||   ||| || ||||||| |||||||||     
T  28037638 ccgactttaaagtgtcgtatattaggaggcaagttaatagggttgctcatagtatagctagagcttctttatctcatcctagcccccatcttttttatag 28037737  T
Q  206 tgtatcatctactttgtac-ccttgattatgaatgaaatgcattaatcttgc 256  Q
    |||| | || | ||||||| | ||| |  |||||||||||||||||| ||||    
T  28037738 tgtaccttcaaatttgtactctttgttcttgaatgaaatgcattaattttgc 28037789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 251
Target Start/End: Original strand, 49508559 - 49508680
Alignment:
Q  131 gaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataatgtatcatctactttgtacccttga 230  Q
    ||||||| |||||||||| |||||||  || ||||||||  |||||| | | | || |||||||||||| ||| ||||| |||||| |||| || ||| |    
T  49508559 gaggcaaacaaataaggtagctcataacatagctagagcttccttatcccaccctagcccccatattttctatgatgtaccatctagtttgaacacttta 49508658  T
Q  231 tta-tgaatgaaatgcattaat 251  Q
    ||| ||||||| ||| ||||||    
T  49508659 ttattgaatgatatgaattaat 49508680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 104 - 244
Target Start/End: Complemental strand, 1638 - 1497
Alignment:
Q  104 acccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttat 203  Q
    |||||||||| ||| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||  ||||||   ||| || ||||||||||||| ||    
T  1638 acccgactttgtagtgtcgtatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccccatatttttaat 1539  T
Q  204 aatgtatcatctactttgtac-ccttgattatgaatgaaatg 244  Q
      |||| | |||||||||||| |||| |||||||||||||||    
T  1538 gttgtaccttctactttgtactccttaattatgaatgaaatg 1497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 254
Target Start/End: Complemental strand, 54421494 - 54421348
Alignment:
Q  109 actttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataatgt 208  Q
    ||||| ||| ||||| | ||| ||||||||| |||||||||| ||||||||||||||||||  ||||||   ||| || |||||||||||| ||| ||||    
T  54421494 actttgtagtgtcgtttattcggaggcaagctaataaggttggtcatagtattgctagagcttccttatcacatcctagcccccatattttctatcatgt 54421395  T
Q  209 atcatctactttgtac-ccttgattatgaatgaaatgcattaatctt 254  Q
    | || ||||||||||| | |||||| || |||| ||| |||||||||    
T  54421394 aacaactactttgtactctttgattttggatgatatgaattaatctt 54421348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 130 - 246
Target Start/End: Original strand, 43733927 - 43734044
Alignment:
Q  130 agaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataatgtatcatctactttgta-ccctt 228  Q
    ||||||||||||||| ||| ||||||||||||||||||||  ||||||   ||| || ||||||||| ||| || ||||||| ||||||| |||  ||||    
T  43733927 agaggcaagcaaatatggtagctcatagtattgctagagctgccttatctcatcctagcccccatatctttcatgatgtatcttctacttggtattcctt 43734026  T
Q  229 gattatgaatgaaatgca 246  Q
    |||||| |||||||||||    
T  43734027 gattattaatgaaatgca 43734044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 21257039 - 21257102
Alignment:
Q  106 ccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagc 169  Q
    ||||||||| || ||||| |||| |||||||||| |||||||||||||||||||||||||||||    
T  21257039 ccgactttacagtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagc 21257102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 244
Target Start/End: Original strand, 32499532 - 32499678
Alignment:
Q  99 gataaacccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattt 198  Q
    |||||||||||||||  || ||||||||||  ||||||||||||||  |||||||||||||||||| ||||  |  |||   ||| || |||||||||||    
T  32499532 gataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccatattt 32499631  T
Q  199 tttataatgtatcatctactttgtacc-cttgattatgaatgaaatg 244  Q
    || || ||||||   |||||||||||| | | |||||||||||||||    
T  32499632 ttcatcatgtattgcctactttgtaccgcctaattatgaatgaaatg 32499678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 42327992 - 42327927
Alignment:
Q  104 acccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagc 169  Q
    |||||||||| ||| ||||||||||  ||||||||||||||  |||||||||| ||||||||||||    
T  42327992 acccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagc 42327927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 5185568 - 5185452
Alignment:
Q  106 ccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataa 205  Q
    ||||||||| || ||||||| ||  ||| ||||| |||| ||||||||||||||| ||||||||  ||||||   |||||| ||||||| |||||||||     
T  5185568 ccgactttaaagtgtcgtatattaggagacaagctaatagggttgctcatagtatagctagagcttccttatctcatcttagcccccatcttttttatag 5185469  T
Q  206 tgtatcatctactttgt 222  Q
    |||| | || |||||||    
T  5185468 tgtaccttcaactttgt 5185452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 38761459 - 38761409
Alignment:
Q  119 gtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagc 169  Q
    ||||| |||| ||| |||||| |||||||||||||||||||||||||||||    
T  38761459 gtcgtttgttaagaagcaagctaataaggttgctcatagtattgctagagc 38761409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 16484241 - 16484179
Alignment:
Q  107 cgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagc 169  Q
    |||||||| || ||||| |||| |||||||||| |||||||||||||||||||||||||||||    
T  16484241 cgactttacagtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagc 16484179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 11629491 - 11629556
Alignment:
Q  104 acccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagc 169  Q
    |||||||||| ||| ||||||||||  ||||||||||||||  |||||||||||||||||||||||    
T  11629491 acccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcatagtattgctagagc 11629556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 9180820 - 9180755
Alignment:
Q  104 acccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagc 169  Q
    |||||||||| ||| ||||||||||  ||||||||||||||  |||||||||| ||||||||||||    
T  9180820 acccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagc 9180755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 34752779 - 34752714
Alignment:
Q  104 acccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagc 169  Q
    |||||||||| ||| ||||||||||  ||||||||||||||   ||||||||||||||||||||||    
T  34752779 acccgactttgtagtgtcgtatgttaggaggcaagcaaatagaattgctcatagtattgctagagc 34752714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 10394650 - 10394743
Alignment:
Q  131 gaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataatgtatcatctactttgtac 224  Q
    ||||||| ||||||||||| |||||||||||||||| ||  | ||||   ||| ||||||| |||||||| || ||||| || || ||||||||    
T  10394650 gaggcaaacaaataaggttactcatagtattgctagcgcatctttatctcatcctaacccctatatttttcatgatgtaacaacttctttgtac 10394743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 5896375 - 5896259
Alignment:
Q  131 gaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataatgtatcatctactttgta-cccttg 229  Q
    |||||||| |||||  || ||||||||||||||||||||  ||||||   ||| || ||||||||||||| || | ||| |   ||||||||| ||||||    
T  5896375 gaggcaagaaaatatagtagctcatagtattgctagagctgccttatctcatcctagcccccatatttttcatgaggtacctcatactttgtatcccttg 5896276  T
Q  230 attatgaatgaaatgca 246  Q
    ||||| ||||| |||||    
T  5896275 attattaatgatatgca 5896259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 257
Target Start/End: Complemental strand, 36757042 - 36756892
Alignment:
Q  108 gactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataatg 207  Q
    |||||| ||| ||||| | ||| ||||||||| ||||| |||||||||||||||||||||||  ||||||   ||| || |||||||||||| ||| |||    
T  36757042 gactttgtagtgtcgtttattcggaggcaagctaataaagttgctcatagtattgctagagcttccttatcacatcctagcccccatattttctatcatg 36756943  T
Q  208 tatcatctactttgtac-ccttgattatgaatgaaatgcattaatcttgct 257  Q
    || || ||||||| ||| | |||||| || || | ||| ||||||||||||    
T  36756942 taacaactactttatactctttgattttggattatatgaattaatcttgct 36756892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 119 - 250
Target Start/End: Complemental strand, 37670784 - 37670652
Alignment:
Q  119 gtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataatgtatcatctact 218  Q
    ||||||||||   |||||| ||||||| |||| ||||||||||||||||||  | |||| | | | || |||||||||||||||| ||||| |  |||||    
T  37670784 gtcgtatgttagaaggcaaacaaataaagttgttcatagtattgctagagcatctttatcccaccctagcccccatattttttatgatgtaccgactact 37670685  T
Q  219 ttgtaccc-ttgattatgaatgaaatgcattaa 250  Q
    |||||||| || |||||| |||||||| |||||    
T  37670684 ttgtaccctttaattatggatgaaatgaattaa 37670652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 10748041 - 10748106
Alignment:
Q  104 acccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagc 169  Q
    |||||||||| ||| ||||||||||  ||||||||||||||  |||||||||| ||||||||||||    
T  10748041 acccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagc 10748106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 257
Target Start/End: Complemental strand, 17737935 - 17737813
Alignment:
Q  135 caagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataatgtatcatctactttgta-cccttgatta 233  Q
    ||||||||||||||  || | ||||||||||||||   ||||| | ||| ||  |||||||||||| |||||||| |   ||||||||| ||||||||||    
T  17737935 caagcaaataaggta-ctaacagtattgctagagccatcttatcccatcatagtccccatatttttcataatgtacctcatactttgtatcccttgatta 17737837  T
Q  234 tgaatgaaatgcattaatcttgct 257  Q
    | ||||| ||||| ||||||||||    
T  17737836 ttaatgatatgcactaatcttgct 17737813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 14786013 - 14786063
Alignment:
Q  119 gtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagc 169  Q
    ||||||||||  |||||||||||||   |||||||||||||||||||||||    
T  14786013 gtcgtatgttaggaggcaagcaaatggtgttgctcatagtattgctagagc 14786063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 30928234 - 30928272
Alignment:
Q  131 gaggcaagcaaataaggttgctcatagtattgctagagc 169  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  30928234 gaggcaaataaataaggttgctcatagtattgctagagc 30928272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 169
Target Start/End: Complemental strand, 14435906 - 14435877
Alignment:
Q  140 aaataaggttgctcatagtattgctagagc 169  Q
    ||||||||||||||||||||||||||||||    
T  14435906 aaataaggttgctcatagtattgctagagc 14435877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 29210933 - 29210806
Alignment:
Q  119 gtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataatgtatcatctact 218  Q
    ||||| ||||| ||||||||||||||| ||  ||||||| |||||||||||  | ||||  |||| ||||||||||||||||||| ||||| | | || |    
T  29210933 gtcgtttgttcggaggcaagcaaataaagtaactcatagcattgctagagcctctttatctaatcctaacccccatattttttatgatgtaccttttaat 29210834  T
Q  219 ttgtacccttgattatgaatgaaatgcatta 249  Q
    |||||| ||   |||||||||||||| ||||    
T  29210833 ttgtactct---ttatgaatgaaatgaatta 29210806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 256
Target Start/End: Complemental strand, 52964238 - 52964087
Alignment:
Q  106 ccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataa 205  Q
    ||||||||| || ||||||| ||  ||||||||  |||| ||||||||||||||| |||||| |  ||||||   ||| || ||||||| |||||||||     
T  52964238 ccgactttaaagtgtcgtatattaggaggcaagttaatagggttgctcatagtatagctagatcttccttatctcatcctagcccccatcttttttatag 52964139  T
Q  206 tgtatcatctactttgtac-ccttgattatgaatgaaatgcattaatcttgc 256  Q
    |||| |||| ||||||||| | ||| |  |||||||||||||||||| ||||    
T  52964138 tgtaccatcaactttgtactctttgttcttgaatgaaatgcattaattttgc 52964087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 244
Target Start/End: Complemental strand, 2497198 - 2497056
Alignment:
Q  99 gataaacccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattt 198  Q
    |||||||||||||||  || ||||||||||    ||||||||||||  |||||||||||||||||| ||||  |  |||   ||| || |||||||||||    
T  2497198 gataaacccgactttgcagtgtcgtatgtt----ggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccatattt 2497103  T
Q  199 tttataatgtatcatctactttgtacc-cttgattatgaatgaaatg 244  Q
    || || ||||||   |||||||||||| ||| |||||||||||||||    
T  2497102 ttcatcatgtattgcctactttgtaccgcttaattatgaatgaaatg 2497056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 250
Target Start/End: Complemental strand, 4741665 - 4741533
Alignment:
Q  119 gtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataatgtatcatctact 218  Q
    ||||||||||  |||||| || ||||| |||||||||||||||||||||||  | |||| ||| | || |||||||||||||| | ||||| |  |||||    
T  4741665 gtcgtatgttaggaggcacgctaataaagttgctcatagtattgctagagcatctttatccaaccctagcccccatattttttgtgatgtaccgactact 4741566  T
Q  219 ttgtac-ccttgattatgaatgaaatgcattaa 250  Q
    || |||   || ||||||||||||||| |||||    
T  4741565 ttatactttttaattatgaatgaaatgaattaa 4741533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 256
Target Start/End: Complemental strand, 54548415 - 54548264
Alignment:
Q  106 ccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataa 205  Q
    ||||||||| || ||||||| ||  ||||||||  ||||  |||||||||||||| ||||||||  ||||||   ||| || ||||||| |||||||||     
T  54548415 ccgactttaaagtgtcgtatattaggaggcaagttaatagagttgctcatagtatagctagagcttccttatctcatcctagcccccatcttttttatag 54548316  T
Q  206 tgtatcatctactttgtac-ccttgattatgaatgaaatgcattaatcttgc 256  Q
    |||| |||| ||||||||| | ||| |  |||||||||| ||||||| ||||    
T  54548315 tgtaccatcaactttgtactctttgttcttgaatgaaatccattaattttgc 54548264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 107 - 212
Target Start/End: Complemental strand, 51140257 - 51140152
Alignment:
Q  107 cgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataat 206  Q
    ||||||||||| ||||| | ||| || |||||| |||| |||||| ||||| || ||||||||  |||||| | ||| || ||||||||| ||||||| |    
T  51140257 cgactttatagtgtcgtttattcggaagcaagcgaatagggttgcacatagcatagctagagcatccttatgccatcctagcccccatatcttttatatt 51140158  T
Q  207 gtatca 212  Q
    ||||||    
T  51140157 gtatca 51140152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 244
Target Start/End: Complemental strand, 11079 - 10933
Alignment:
Q  99 gataaacccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattt 198  Q
    |||||||||||||||  || ||||||||||  ||||||||||||||  ||||||| |||||||||| ||||  |  |||   ||| || |||||||||||    
T  11079 gataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcgtagtattgctcgagcttcgctatctcatcctagcccccatattt 10980  T
Q  199 tttataatgtatcatctactttgtacc-cttgattatgaatgaaatg 244  Q
    || || ||||||   |||||||||||| | | |||||||||||||||    
T  10979 ttcatcatgtattgcctactttgtaccgcctaattatgaatgaaatg 10933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 10159044 - 10158979
Alignment:
Q  104 acccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagc 169  Q
    |||||||||| ||| ||||||||||  ||||||||||||||  |||||||||| ||||||||||||    
T  10159044 acccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagc 10158979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 250
Target Start/End: Original strand, 16863234 - 16863379
Alignment:
Q  106 ccgactttatagggtcgtatgttcagaggcaagcaaataaggttgctcatagtattgctagagcgcccttatt--caatcttaacccccatattttttat 203  Q
    |||||||| ||| ||||||||||| |||||||||||||| ||| ||||| |  || ||||||||  || ||||  ||||| || |||||||||||| |||    
T  16863234 ccgactttgtagtgtcgtatgttcggaggcaagcaaatagggtcgctcacaacatagctagagcatcc-tattcccaatc-tagcccccatattttctat 16863331  T
Q  204 aatgtatcatctactttgta-cccttgattatgaatgaaatgcattaa 250  Q
    |||||| |   |||||||||  | ||||||||||||||||||||||||    
T  16863332 aatgtaccgcttactttgtattctttgattatgaatgaaatgcattaa 16863379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 245
Target Start/End: Complemental strand, 69113 - 69002
Alignment:
Q  135 caagcaaataaggttgctcatagtattgctagagcgcccttattcaatcttaacccccatattttttataatgtatcatctactttgtaccc-ttgatta 233  Q
    ||||||||||| |||||||||||||| ||||||||| | |||||| | | || || ||||||||||||| ||||| |   |||||| ||||| || ||||    
T  69113 caagcaaataaagttgctcatagtatcgctagagcgtctttattccaccatagcctccatattttttatgatgtaccgattactttttaccctttaatta 69014  T
Q  234 tgaatgaaatgc 245  Q
    || |||||||||    
T  69013 tgcatgaaatgc 69002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University