View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12535_high_15 (Length: 250)
Name: NF12535_high_15
Description: NF12535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12535_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 36545419 - 36545202
Alignment:
| Q |
14 |
agaagatggtgcttgttggttgtcaaaaatgttacatgtatgttctttcatcagaggttgagccaaagtgtccccagtgcaacaccacaatacttcttga |
113 |
Q |
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| T |
36545419 |
agaagatggtgcttgttggttgtcaaaaatgttacatgtatgttctttcatcagaggttgagccaaagtgtccccagtgcaacaccacagtacttcttga |
36545320 |
T |
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| Q |
114 |
tcttttcaaataggatgattaagattgactaatgagatagataaaactaagcaaaatcagaagaattatggattgttttgtgttagtttgatcgccaaat |
213 |
Q |
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| T |
36545319 |
tcttttcaaataggatgattaaaattgactaatgagatagataaaactaagcaaaatcagaagaattatggattgttttgtgttagtttgatcgccaaat |
36545220 |
T |
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| Q |
214 |
gcatgtaaaatgttactc |
231 |
Q |
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| T |
36545219 |
gcatgtaaaatgttactc |
36545202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 36550399 - 36550297
Alignment:
| Q |
17 |
agatggtgcttgttggttgtcaaaaatgttacatgtatgttctttcatcagaggttgagccaaagtgtccccagtgcaacaccacaatacttcttgatct |
116 |
Q |
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||||||| ||||||||||||| |||||||||||||||||| | |||||||| ||||| |||||||||||| ||||||| || ||| | |||||||||| |
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| T |
36550399 |
agatggttcttgttggttgtcctaaatgttacatgtatgttatgtcatcagaagttgaaccaaagtgtcccaagtgcaagactacagtttttcttgatct |
36550300 |
T |
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| Q |
117 |
ttt |
119 |
Q |
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||| |
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| T |
36550299 |
ttt |
36550297 |
T |
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