View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12535_high_18 (Length: 240)

Name: NF12535_high_18
Description: NF12535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12535_high_18
NF12535_high_18
[»] chr1 (5 HSPs)
chr1 (1-224)||(36728376-36728597)
chr1 (9-58)||(25293726-25293775)
chr1 (9-54)||(17562512-17562557)
chr1 (9-53)||(42507299-42507343)
chr1 (9-46)||(47141191-47141228)
[»] chr7 (3 HSPs)
chr7 (5-59)||(36299203-36299257)
chr7 (9-57)||(33189723-33189771)
chr7 (9-52)||(47925239-47925282)
[»] scaffold0634 (1 HSPs)
scaffold0634 (9-58)||(8947-8996)
[»] scaffold0115 (1 HSPs)
scaffold0115 (9-58)||(22379-22428)
[»] chr5 (6 HSPs)
chr5 (9-58)||(39800121-39800170)
chr5 (9-58)||(40057256-40057305)
chr5 (5-54)||(3926595-3926644)
chr5 (9-54)||(35188304-35188349)
chr5 (5-49)||(42837909-42837953)
chr5 (9-54)||(39206813-39206858)
[»] chr3 (3 HSPs)
chr3 (9-58)||(12149389-12149438)
chr3 (9-52)||(27926316-27926359)
chr3 (9-50)||(3778662-3778703)
[»] chr8 (3 HSPs)
chr8 (5-54)||(36582612-36582661)
chr8 (9-59)||(8226916-8226966)
chr8 (9-54)||(9762607-9762652)
[»] chr4 (5 HSPs)
chr4 (9-58)||(40568613-40568662)
chr4 (9-54)||(38952027-38952072)
chr4 (9-53)||(8818972-8819016)
chr4 (9-57)||(19842135-19842183)
chr4 (12-52)||(43624741-43624781)
[»] chr2 (2 HSPs)
chr2 (9-58)||(5705002-5705051)
chr2 (9-58)||(42622345-42622394)
[»] chr6 (3 HSPs)
chr6 (9-53)||(7622707-7622751)
chr6 (9-59)||(10788880-10788930)
chr6 (9-54)||(10408622-10408667)
[»] scaffold0057 (1 HSPs)
scaffold0057 (9-54)||(66943-66988)


Alignment Details
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 36728597 - 36728376
Alignment:
Q  1 catgaagatatccgctccgtgtctgtggctgattttatccgcggatatccacggatgcaagnnnnnnngccatgcctatttaccatcttgtttatctnnn 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |       ||||||||| ||||||||||||||||| |       
T  36728597 catgaagatatccgctccgtgtctgtggcggattttatccgcggatatccacggatgcgggtttttttgccatgcctgtttaccatcttgtttatgtaca 36728498  T
Q  101 nnnnnnnnnnnngttaatctgcagtgtaatttagcctagttaaaataatcccggtaggtagttcgagtgcaaggaatgtggcagataacatgtttctatg 200  Q
                ||||| |||||||  ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36728497 aaaaaaaaa---gttaacctgcagtaaaatttagcctagttaaaattatcccggtaggtagttggagtgcaaggaatgtggcagataacatgtttctatg 36728401  T
Q  201 gttaccaagaagg-cgtgattcttg 224  Q
    ||||||||||||| |||||||||||    
T  36728400 gttaccaagaaggacgtgattcttg 36728376  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 25293775 - 25293726
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacggatgc 58  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  25293775 tatccgctccgtgtccgtggcggattttatccgcggatatccacggatgc 25293726  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 17562557 - 17562512
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacgg 54  Q
    |||||||||||||||  |||| ||||||||||||||||||||||||    
T  17562557 tatccgctccgtgtccatggcagattttatccgcggatatccacgg 17562512  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 42507343 - 42507299
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacg 53  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||||    
T  42507343 tatccgctccgtgtcagtggcagattttattcgcggatatccacg 42507299  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 47141191 - 47141228
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggat 46  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  47141191 tatccgctccgtgtccgtggcggattttatccgcggat 47141228  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 36299203 - 36299257
Alignment:
Q  5 aagatatccgctccgtgtctgtggctgattttatccgcggatatccacggatgca 59  Q
    ||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||    
T  36299203 aagatatccgctccgtgtccgtggcagattttatccgcgaatatccacggatgca 36299257  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 33189723 - 33189771
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacggatg 57  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  33189723 tatccgctccgtgtccgtggcggattttatccgcggatatccacggatg 33189771  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 47925239 - 47925282
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccac 52  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||    
T  47925239 tatccgttccgtgtccgtggcggattttatccgcggatatccac 47925282  T

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Target: scaffold0634 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 8996 - 8947
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacggatgc 58  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  8996 tatccgctccgtgtccgtggcggattttatccgcggatatccacggatgc 8947  T

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Target: scaffold0115 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 22379 - 22428
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacggatgc 58  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  22379 tatccgctccgtgtccgtggcggattttatccgcggatatccacggatgc 22428  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 39800170 - 39800121
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacggatgc 58  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  39800170 tatccgctccgtgtccgtggcggattttatccgcggatatccacggatgc 39800121  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 40057256 - 40057305
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacggatgc 58  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  40057256 tatccgctccgtgtccgtggcggattttatccgcggatatccacggatgc 40057305  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 3926595 - 3926644
Alignment:
Q  5 aagatatccgctccgtgtctgtggctgattttatccgcggatatccacgg 54  Q
    ||||||||||||||||| ||||||| ||||||||| ||| ||||||||||    
T  3926595 aagatatccgctccgtgcctgtggcggattttatctgcgaatatccacgg 3926644  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 35188349 - 35188304
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacgg 54  Q
    ||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  35188349 tatccgctccgtgtccgtggcggattttatccgcggatatctacgg 35188304  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 42837909 - 42837953
Alignment:
Q  5 aagatatccgctccgtgtctgtggctgattttatccgcggatatc 49  Q
    ||||||||||||| ||||||||||| | |||||||||||||||||    
T  42837909 aagatatccgctctgtgtctgtggcgggttttatccgcggatatc 42837953  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 39206858 - 39206813
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacgg 54  Q
    ||||||||| ||| | ||||| ||||||||||||||||||||||||    
T  39206858 tatccgctctgtgcccgtggcggattttatccgcggatatccacgg 39206813  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 12149389 - 12149438
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacggatgc 58  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  12149389 tatccgctccgtgtccgtggcggattttatccgcggatatccacggatgc 12149438  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 27926359 - 27926316
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccac 52  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||    
T  27926359 tatccgctccgtgtccgtggcggattttatccgcggatatccac 27926316  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 3778703 - 3778662
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatcc 50  Q
    ||||||||||||| | ||||| ||||||||||||||||||||    
T  3778703 tatccgctccgtgcccgtggcggattttatccgcggatatcc 3778662  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 36582661 - 36582612
Alignment:
Q  5 aagatatccgctccgtgtctgtggctgattttatccgcggatatccacgg 54  Q
    ||||||||||||||||||  ||||| ||||||||||||||||||||||||    
T  36582661 aagatatccgctccgtgttcgtggcggattttatccgcggatatccacgg 36582612  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 8226966 - 8226916
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacggatgca 59  Q
    ||||| ||||||| | ||| | |||||||||||||||||||||||||||||    
T  8226966 tatccactccgtgcccgtgacggattttatccgcggatatccacggatgca 8226916  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 9762652 - 9762607
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacgg 54  Q
    ||||||||||||| | ||||| |||||||||||| |||||||||||    
T  9762652 tatccgctccgtgcccgtggcggattttatccgcagatatccacgg 9762607  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 40568662 - 40568613
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacggatgc 58  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||||||    
T  40568662 tatccgctccgtgtccgtggcgaattttatccgcggatatccacggatgc 40568613  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 38952027 - 38952072
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacgg 54  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||||    
T  38952027 tatccgctccgtacctgtggcggattttatccgcggatatccacgg 38952072  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 8819016 - 8818972
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacg 53  Q
    |||||||| |||||| ||| | |||||||||||||||||||||||    
T  8819016 tatccgcttcgtgtccgtgacggattttatccgcggatatccacg 8818972  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 19842135 - 19842183
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacggatg 57  Q
    ||||| ||||||||| ||||| ||||||||||| ||||||||| |||||    
T  19842135 tatccactccgtgtccgtggcggattttatccgtggatatccatggatg 19842183  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 43624741 - 43624781
Alignment:
Q  12 ccgctccgtgtctgtggctgattttatccgcggatatccac 52  Q
    |||||||||||| ||||| ||||||||| ||||||||||||    
T  43624741 ccgctccgtgtccgtggcggattttatctgcggatatccac 43624781  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 5705002 - 5705051
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacggatgc 58  Q
    |||||| |||||| | ||||| ||||||||||||||||||||||||||||    
T  5705002 tatccgttccgtgcccgtggcggattttatccgcggatatccacggatgc 5705051  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 42622394 - 42622345
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacggatgc 58  Q
    |||||| |||||||| ||| | ||||||||||||||||||||||||||||    
T  42622394 tatccgttccgtgtccgtgacggattttatccgcggatatccacggatgc 42622345  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 7622707 - 7622751
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacg 53  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||||    
T  7622707 tatccgctccgcgtccgtggcggattttatccgcggatatccacg 7622751  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 10788880 - 10788930
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacggatgca 59  Q
    ||||||||||||| | |||||  ||||||||||||||||||||||| ||||    
T  10788880 tatccgctccgtgcccgtggcgaattttatccgcggatatccacgggtgca 10788930  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 10408667 - 10408622
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacgg 54  Q
    |||||||||||| || ||||| ||||||||| ||||||||||||||    
T  10408667 tatccgctccgtttccgtggcggattttatctgcggatatccacgg 10408622  T

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Target: scaffold0057 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 66943 - 66988
Alignment:
Q  9 tatccgctccgtgtctgtggctgattttatccgcggatatccacgg 54  Q
    ||||||||||||||||||| | |||||||||| |||||||| ||||    
T  66943 tatccgctccgtgtctgtgacagattttatccacggatatctacgg 66988  T

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