View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12535_high_3 (Length: 492)
Name: NF12535_high_3
Description: NF12535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12535_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 474
Target Start/End: Complemental strand, 46129827 - 46129366
Alignment:
| Q |
14 |
cagagatgtgtcaataaatgttcaaa-tttggttaactattaagaacttatgtgcaccacatcatgatttaggaaaacacatacacctatagattatata |
112 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46129827 |
cagagatgtgtcggcaaatgttcaaaatttggttaaaaattaagaacttatgtgcaccacatcatgatttaggaaaacacatacgcctatagattatata |
46129728 |
T |
|
| Q |
113 |
atgtgcaacactttgattcattaaaagtaatctagatgaggacaatacacagtggcatcatagaatttaggcataacataagaaacgagtaaaacacccc |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46129727 |
atgtgtaacactttgattcattaaaagtaatctagatgaggacaatacacagtggcatcatagaatttaggcataacataagaaacgagtaaaacacccc |
46129628 |
T |
|
| Q |
213 |
aggtaaaatacaacgactacattcataccccctgacagtagctttccaaactgagtagttgcttccagttgtgcagcagggtcgtccgacagtaagtcct |
312 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46129627 |
aggtaaaatacaaccactacattcataccccctgacagtagctttccaaactgagtagctgcttccagttgtgcagcagggtcgtccgacagtaagtcct |
46129528 |
T |
|
| Q |
313 |
ttttcattgcaagaacggtttgtgcctgttaaacaacattaagagtaaacaacattaaggttcatccgacttgctaaagaacattaagggtcgtccgaca |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46129527 |
ttttcattgcaagaacggtttgtgcctgttaaacaacattaagagtaaacaacattaaggttcatccgacatgctaaagaacattaagggtcgtccgaca |
46129428 |
T |
|
| Q |
413 |
tgcattatatgtagctctagctctaacatggaccnnnnnnnncaacagaattctgttaaagc |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46129427 |
tgcattatatgtagctctagctctaacatggaccttttttttcaacagaattctgttaaagc |
46129366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 46702608 - 46702243
Alignment:
| Q |
17 |
agatgtgtcaataaatgttcaaatttggttaactattaagaacttatgtgcaccacatcatgatttaggaaaacacatacacctatagattatataatgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
46702608 |
agatgtgtcaataaatgttcaaatttggttaacaattaagaacttatgtgcactacatcatgatttaggaaaacacatacacctatagattacataacgt |
46702509 |
T |
|
| Q |
117 |
gcaacactttgattcattaaaagtaatctagatgaggacaatacacagtggcatcatagaatttaggcataa-cataagaaacgagtaaaacaccccagg |
215 |
Q |
| |
|
| ||||||||| || ||||||||||||||||||||||||| |||| ||||||||| | ||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
46702508 |
gtaacactttgttttattaaaagtaatctagatgaggacattacatagtggcatcgtt-aatttaggcataaacataagaaacgagtattacaccccaga |
46702410 |
T |
|
| Q |
216 |
taaaatacaacgactacattcataccccctgacagtagctttccaaactgagtagttgcttccagttgtgcagcagggtcgtccgacagtaagtcctttt |
315 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
46702409 |
taaaatataatgactacattcataccccctgacagtagctttccaaactgagtagttgcttccagttgtgcagcagggtcgtccgacagtaagccctgtt |
46702310 |
T |
|
| Q |
316 |
tcattgcaagaacggtttgtgcctgttaaacaacattaagagtaaacaacattaaggttcatccgac |
382 |
Q |
| |
|
|||||||| ||| |||||| |||||||||||| |||||||||||||||||||||||| || |||||| |
|
|
| T |
46702309 |
tcattgcaggaatggtttgcgcctgttaaacaccattaagagtaaacaacattaagggtcgtccgac |
46702243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 46123805 - 46123452
Alignment:
| Q |
14 |
cagagatgtgtcaataaatgttcaaa-tttggttaactattaagaacttatgtgcaccacatcatgatttaggaaaacaca--tacacctatagattata |
110 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||| |||||||||||||| | || ||||||||||||||| ||||||| ||||| || ||||| |
|
|
| T |
46123805 |
cagagatgtgtcggcaaatgttcaaaatttggttaaaaattaagaacttatgagaactacatcatgatttagggaaacacacatacactactatgttata |
46123706 |
T |
|
| Q |
111 |
ta--atgtgcaacactttgattcattaaaagtaatctagatgaggacaatacacagtggcatcatagaatttaggcataacataagaa-acgagtaaaac |
207 |
Q |
| |
|
|| |||| || ||||| || |||||||||| || || |||||| |||||||||| |||||| ||||||||||| |||| |||| | ||||| || |
|
|
| T |
46123705 |
tacaatgtataatactttttttttttaaaagtaaactcgaggaggacgttacacagtggtatcatataatttaggcatcacattagaagaagagtattac |
46123606 |
T |
|
| Q |
208 |
accccaggtaaaatacaacgactacattcataccccctgacagtagctttccaaactgagtagttgcttccagttgtgcagcagggtcgtccgacagtaa |
307 |
Q |
| |
|
| |||| ||||||| || || |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |
|
|
| T |
46123605 |
atcccaaataaaatataatgattacattcataccccctgatagtagctttccaaactgagtagttgcttcaagttgtgcagcagggtcgttagacaataa |
46123506 |
T |
|
| Q |
308 |
gtcctttttcattgcaagaacggtttgtgcctgttaaacaacattaagagtaaa |
361 |
Q |
| |
|
| || | |||||||| ||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
46123505 |
ggccagtgtcattgcaggaatggttttcacctgttaaacaacattaagagtaaa |
46123452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 46702267 - 46702209
Alignment:
| Q |
387 |
taaagaacattaagggtcgtccgacatgcattatatgtagctctagctctaacatggac |
445 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
46702267 |
taaacaacattaagggtcgtccgacatgcattatatgtagctctaactctaaaatggac |
46702209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 446
Target Start/End: Complemental strand, 46123395 - 46123358
Alignment:
| Q |
409 |
gacatgcattatatgtagctctagctctaacatggacc |
446 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
46123395 |
gacatgcattatatgtagctctaggtctaaaatggacc |
46123358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University