View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12535_high_4 (Length: 490)
Name: NF12535_high_4
Description: NF12535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12535_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 9 - 475
Target Start/End: Original strand, 44779427 - 44779893
Alignment:
| Q |
9 |
agcataggtgatgcaaagaaattttctcaacaattgttgaaagcaaaaaataccattgcaaaattattagtgtcatttgtgtgatgccgaatgcgaaaga |
108 |
Q |
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| T |
44779427 |
agcataggtgatgcaaagaaattttctcaacaattgttgaaagcaaaaaataccattgcaaaattattagtgtcatttgtgtgatgccgaatacgaaaga |
44779526 |
T |
|
| Q |
109 |
atgaaacagataacggtgtttatggtaagttaaaaaatcaaataaaagggattgtgttaaatttctcaaaaattggtggggaacataagtgagggttacc |
208 |
Q |
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| T |
44779527 |
attaaacatataacggtgtttatggta-gttaaaaaatcaaataaaagggattgtgttaaatttctcaaaaattggtgggggacataagtgagggttatc |
44779625 |
T |
|
| Q |
209 |
agtgaaataagatataatatgttctactttatccaaacagcgaaacataaatttattctattccattaatctaaacatatctgaaagatattaaaggaaa |
308 |
Q |
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| T |
44779626 |
ggtgaaataaaatataatatattccactttatccaaacagcgaaacataaatttattctattccattaatttaaacatatctgaaagatattaaaggaaa |
44779725 |
T |
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| Q |
309 |
atattataagaactnnnnnnntacga-nnnnnnnngcagggttcgaaaacaaaaatctatgtgtttatagttactattttcttaattaaccctatgcagt |
407 |
Q |
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|| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| |
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| T |
44779726 |
atgttataagaactaaaaaaatacgattttttttttcagggttcgaaaacaaaaatctatgtatttatagttactattttcttaattaaccctgtacagt |
44779825 |
T |
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| Q |
408 |
ataaagagggacatgttgaaacacacagtgggggcacttgccttcgcaatgctgcatgtagttgaatt |
475 |
Q |
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| T |
44779826 |
ataaagagggacatgttgaaacacacagtgggggcacttgccttcgcaatgctgcatgtagttgaatt |
44779893 |
T |
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