View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12535_high_5 (Length: 471)

Name: NF12535_high_5
Description: NF12535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12535_high_5
NF12535_high_5
[»] chr1 (8 HSPs)
chr1 (1-452)||(40689564-40690015)
chr1 (336-412)||(34710513-34710589)
chr1 (243-295)||(34714059-34714111)
chr1 (346-412)||(34714219-34714285)
chr1 (113-177)||(34710335-34710399)
chr1 (113-177)||(34713959-34714023)
chr1 (145-185)||(27509163-27509203)
chr1 (113-177)||(34406576-34406640)
[»] chr7 (2 HSPs)
chr7 (120-196)||(7687870-7687946)
chr7 (118-190)||(40243778-40243850)
[»] chr2 (3 HSPs)
chr2 (124-198)||(41234713-41234787)
chr2 (145-197)||(35505956-35506008)
chr2 (345-414)||(35506177-35506246)
[»] chr4 (2 HSPs)
chr4 (105-194)||(20926000-20926089)
chr4 (337-414)||(20925729-20925806)


Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 40689564 - 40690015
Alignment:
Q  1 tcatcaacaaagaacaccgatgatttagatggtggaatgatgaactacacaaaatatagcagtagaaaattcatggaagctgctactttggattctggaa 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689564 tcatcaacaaagaacactgatgatttagatggtggaatgatgaactacacaaaatatagcagtagaaaattcatggaagctgctactttggattctggaa 40689663  T
Q  101 gagctggtttctatgtttatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaaaagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689664 gagctggtttctatgtttatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaaaagc 40689763  T
Q  201 tttagcaattgctcaagagaaaaagcacttatatgatgatgatcaagagtttcaattcaaacccaatcataaatcaatttcccttcaattgaataacaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40689764 tttagcaattgctcaagagaaaaagcacttatatgatgatgatcaagagtttcaattcaaacccaatcataaatcaatttctcttcaattgaataacaat 40689863  T
Q  301 ggtaagggaaatctacatggtggaagcaacaataacaacaagtctaaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689864 ggtaagggaaatctacatggtggaagcaacaataacaacaagtctaaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactag 40689963  T
Q  401 gtggccatatgaggcgtcaccgcgcgccggtgggaacatctgcagccaacac 452  Q
    |||||||||||||||| ||||| || ||||||||||| ||||||||||||||    
T  40689964 gtggccatatgaggcgccaccgtgcaccggtgggaacttctgcagccaacac 40690015  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 412
Target Start/End: Original strand, 34710513 - 34710589
Alignment:
Q  336 caacaagtctaaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatga 412  Q
    |||||| || |||||| ||| ||| ||||||||||||||| ||||||||||||| || ||||| |||||||||||||    
T  34710513 caacaaatccaaggtttatgggtgctccatttgtggttctaaattcacatctggccaggcacttggtggccatatga 34710589  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 34714059 - 34714111
Alignment:
Q  243 tcaagagtttcaattcaaacccaatcataaatcaatttcccttcaattgaata 295  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||    
T  34714059 tcaagagtttcaattcaaaaccaataataaatcaatttcccttaaattgaata 34714111  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 346 - 412
Target Start/End: Original strand, 34714219 - 34714285
Alignment:
Q  346 aaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatga 412  Q
    |||||| ||| ||| ||||||||||||||| ||||||||||||| || ||||| |||||||||||||    
T  34714219 aaggtttatgggtgctccatttgtggttctaaattcacatctggccaggcacttggtggccatatga 34714285  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 34710335 - 34710399
Alignment:
Q  113 atgtttatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccataga 177  Q
    |||| |||| ||||||||||||||||| ||||||| |||||| |||||| ||||| |||||||||    
T  34710335 atgtgtatgcatgcaaaacatgcaacaaaacattcacttcatctcaagcacttggaggccataga 34710399  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 34713959 - 34714023
Alignment:
Q  113 atgtttatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccataga 177  Q
    |||| |||| ||||||||||||||| | ||| ||| ||||||||||||| ||||| |||||||||    
T  34713959 atgtgtatgcatgcaaaacatgcaaaaaaactttcacttcatttcaagcacttggaggccataga 34714023  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 27509203 - 27509163
Alignment:
Q  145 ttcccttcatttcaagcccttggtggccatagagcaagtca 185  Q
    ||||||||||| ||||| |||||||| ||||||||||||||    
T  27509203 ttcccttcattccaagcacttggtggacatagagcaagtca 27509163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 34406640 - 34406576
Alignment:
Q  113 atgtttatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccataga 177  Q
    |||| |||| |||||||||||| |||| | | ||| ||||||||||||| ||||| |||||||||    
T  34406640 atgtgtatgcatgcaaaacatgtaacaaatctttcacttcatttcaagcacttggaggccataga 34406576  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 7687946 - 7687870
Alignment:
Q  120 tgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaa 196  Q
    |||||| |||||||| || |||  ||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  7687946 tgaatgtaaaacatgtaatagacaatttccttcatttcaagccctaggtggtcatagggcaagtcacaagaaaccaa 7687870  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 40243850 - 40243778
Alignment:
Q  118 tatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaaga 190  Q
    |||||||||||||| ||||||| || |||| | || ||||||||||||||||||||||| || || |||||||    
T  40243850 tatgaatgcaaaacgtgcaacaaaaaattctcatcttttcaagcccttggtggccatagggctagccacaaga 40243778  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 41234713 - 41234787
Alignment:
Q  124 tgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaaaa 198  Q
    |||||||||||||||| |  |||| |||| ||||||||  | ||||||||||||||||||||||||| |||||||    
T  41234713 tgcaaaacatgcaacaaagaattctcttcttttcaagctttaggtggccatagagcaagtcacaagagaccaaaa 41234787  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 35505956 - 35506008
Alignment:
Q  145 ttcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaaa 197  Q
    |||| ||||||||||||  | ||||| ||||||||||||||||||||||||||    
T  35505956 ttccattcatttcaagcgttgggtggacatagagcaagtcacaagaaaccaaa 35506008  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 414
Target Start/End: Original strand, 35506177 - 35506246
Alignment:
Q  345 taaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatgagg 414  Q
    ||||||||||| |||||| || |||||  ||||||||||||| ||||||||| | ||||| || ||||||    
T  35506177 taaggttcatgggtgttcaatatgtggagctgaattcacatcaggtcaagcattgggtggtcacatgagg 35506246  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 20926089 - 20926000
Alignment:
Q  105 tggtttctatgtttatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaacc 194  Q
    |||||| ||| ||||||||||||||||||| |||||||| || ||||| ||||||||  | ||||| || || ||||||||||| |||||    
T  20926089 tggtttgtatatttatgaatgcaaaacatgtaacagaacttttccttcttttcaagctttgggtggtcacagggcaagtcacaaaaaacc 20926000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 414
Target Start/End: Complemental strand, 20925806 - 20925729
Alignment:
Q  337 aacaagtctaaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatgagg 414  Q
    |||||| | ||| ||||||||||||||||||||||||| || |||||||| || |||||| | ||||| || ||||||    
T  20925806 aacaaggccaagattcatgagtgttccatttgtggttcagagttcacatccggacaagcattgggtggacacatgagg 20925729  T

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