View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12535_high_7 (Length: 448)
Name: NF12535_high_7
Description: NF12535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12535_high_7 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 15 - 429
Target Start/End: Original strand, 32914973 - 32915387
Alignment:
| Q |
15 |
cacagaacagcccttaagcactgcctatacaattgatcctatgtactccatcactgcataccgaagcctcaaaaccatccagctagaactgtgcatctgt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32914973 |
cacagaacagcccttaagcactgcctatacaattgatcctatgtacttcatcactgcataccgaagcctcaaaaccatccagctagaactgtgcatctgt |
32915072 |
T |
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| Q |
115 |
aatatgcgctcctaaaaactcacagccggtacacaagcccaaaagcaccgccagttacttcacgtgagaagaaaatctcgacagactcaccagtactgtc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32915073 |
aatatgcgctcctaaaaactcacagccggtacacaagcccaaaagcaccgccagttacttcacgtgagaagaaaatctcgacagactcaccagtactgtc |
32915172 |
T |
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| Q |
215 |
actacaccccaattagctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactcca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32915173 |
actacaccccaattagctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgcttgtatattcagcctacacaaactcca |
32915272 |
T |
|
| Q |
315 |
ccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaata |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32915273 |
ccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaata |
32915372 |
T |
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| Q |
415 |
gttgcatgccaaatg |
429 |
Q |
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| T |
32915373 |
gttgcatgccaaatg |
32915387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 24945456 - 24945376
Alignment:
| Q |
348 |
atcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaat |
428 |
Q |
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| T |
24945456 |
atcatccacatatttcacctcattccggaaaatacaatgatttctagcttgccaaattgaccaaatagttgcatgccaaat |
24945376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 232 - 428
Target Start/End: Original strand, 9359281 - 9359477
Alignment:
| Q |
232 |
tacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactccaccgccatgaattaacca |
331 |
Q |
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| T |
9359281 |
tacttccttaatagacattcttgtggattccaattccattcataatataagcatgtttgcatatcaagcctatacaaactccaccgccacgaattaacaa |
9359380 |
T |
|
| Q |
332 |
caatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaat |
428 |
Q |
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| T |
9359381 |
caatctccgacaaaagatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaat |
9359477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 231 - 429
Target Start/End: Complemental strand, 2308361 - 2308163
Alignment:
| Q |
231 |
ctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactccaccgccatgaattaacc |
330 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||| ||| ||||| ||||| || ||| |||||||||||| ||||||||| ||| |
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| T |
2308361 |
ctacttcctcgttagacattcttgaggattccaattccattcataatatagacaggtttgcatattaagtctagacaaactccacctccatgaatttacc |
2308262 |
T |
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| Q |
331 |
acaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatg |
429 |
Q |
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| T |
2308261 |
acaatctccgccaaaatatcttccacatgtattacctcattaaggaaaatcgaatggttcctcgcttgccaaatagcccatatagttgcatgccaaatg |
2308163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 246 - 428
Target Start/End: Original strand, 520028 - 520210
Alignment:
| Q |
246 |
acattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactccaccgccatgaattaaccacaatttccgccaaa |
345 |
Q |
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|||||||||||||||||||||||||||||| ||| ||| ||||| ||| |||||| ||||| |||||||| || |||| ||||||| ||| |
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| T |
520028 |
acattcttgaggattccaattccattcatagtatagacaagtttgcataacaagcctagtcaaacaccaccgcctcgacaacaccattatttccgacaat |
520127 |
T |
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| Q |
346 |
agatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaat |
428 |
Q |
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| T |
520128 |
aattcatccacagatttcacctcattccggaatataaaatgatttctcgcttgccaaattgaccaaatagttgcatcccaaat |
520210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 43805617 - 43805528
Alignment:
| Q |
231 |
ctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactccaccgcca |
320 |
Q |
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| T |
43805617 |
ctacttcctcaaaaggcactcttgaggattccaacttcattcataatataaacaagtttgcatattaagcctatacaaactccaccgcca |
43805528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 428
Target Start/End: Complemental strand, 51091205 - 51091123
Alignment:
| Q |
346 |
agatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaat |
428 |
Q |
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| T |
51091205 |
agatcttccacatatttcacatcattccgaaaaataatgtgattcctaacttgccaaaggaccaaaatagttgcatgccaaat |
51091123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 428
Target Start/End: Original strand, 41195074 - 41195252
Alignment:
| Q |
250 |
tcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactccaccgccatgaattaaccacaatttccgccaaaagat |
349 |
Q |
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| T |
41195074 |
tcttgtggattccaattccactcataaaaaaggcaagtttgaatagaaagtttactcaaactccacctccaagacatcaccattatttccgacaataatt |
41195173 |
T |
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| Q |
350 |
catccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaat |
428 |
Q |
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|||| |||| ||||| ||||| || ||||| | | ||| ||||||||||||||| |||||||||| ||||||||||| |
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| T |
41195174 |
catcaacatatttcaattcattccggaaaataatgtaatttctcgcttgccaaataacccaaatagtagcatgccaaat |
41195252 |
T |
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