View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12535_high_9 (Length: 372)
Name: NF12535_high_9
Description: NF12535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12535_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 117 - 364
Target Start/End: Original strand, 47291069 - 47291318
Alignment:
| Q |
117 |
gaagccttttatgattggagattctgtaagtcaaccgagcattgaaaaaattgttgttacaacc-taaatttcattttgaaatactacagttttagagta |
215 |
Q |
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| T |
47291069 |
gaagccttttatgattggagattttgtaagtcaaccgagcattgaacaa-ttgttgttacaatcataaatttcattttgaaatactacagttttagagta |
47291167 |
T |
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| Q |
216 |
taataaatacacaacggaatctatgatgaatggaaacacgtaaactttattttcaaaagtgaagcttagacatgtcacattttacatttttacgcaaact |
315 |
Q |
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| T |
47291168 |
taataaatacacaacggaatctatgatgaatggaaacacgtaaattttattttcaaaagtgaagcttagacatgtcacattttacatttttacgcaaact |
47291267 |
T |
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| Q |
316 |
ttaaaaatgaatttacat--tataatacaatgctcagctccagtgaacgag |
364 |
Q |
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| T |
47291268 |
ttgaaaatgaatttacattatataatacaatgttcagctctagtgaacgag |
47291318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 47290951 - 47291064
Alignment:
| Q |
18 |
aatttgggcgtatatgatcctcatggattattctctcgtgattggaaatgattaggtgagttacagaagatagaattgtggcttccttcgtatatggaag |
117 |
Q |
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| T |
47290951 |
aatttgggcgtat--gatcctcatggattattctctcgtgatgggaaatgattaggtgagttacagaagatagaattgtggcttccttc------ggagg |
47291042 |
T |
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| Q |
118 |
aagccttttatgattggagatt |
139 |
Q |
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| T |
47291043 |
aagccttttatgattggagatt |
47291064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 256 - 345
Target Start/End: Original strand, 47300139 - 47300228
Alignment:
| Q |
256 |
taaactttattttcaaaagtgaagcttagacatgtcacattttacatttttacgcaaactttaaaaatgaatttacattataatacaatg |
345 |
Q |
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| T |
47300139 |
taaactttatttacaaatgtgaagcatagacatgccacattttaaacttttacgcggactttgaaaataaatttacattaccatacaatg |
47300228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 47289379 - 47289463
Alignment:
| Q |
256 |
taaactttattttcaaaagtgaagcttagacatgtcacattttacatttttacgcaaactttaaaaatgaatttacattataata |
340 |
Q |
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| T |
47289379 |
taaactttattttcaaatgtgaaactcagacatgccacattttaaacttttagactgactttaaaaataggtttacattacaata |
47289463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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