View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12535_low_10 (Length: 333)
Name: NF12535_low_10
Description: NF12535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12535_low_10 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 333
Target Start/End: Complemental strand, 28731477 - 28731156
Alignment:
| Q |
12 |
acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28731477 |
acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgttccgaatctcctccgtgaac |
28731378 |
T |
|
| Q |
112 |
acatcgttccaggtatattcaccagcgaataactccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc |
211 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| |||| |||||||| |
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| T |
28731377 |
acatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaactgtcacttc |
28731278 |
T |
|
| Q |
212 |
cgagtcgattcatccgaacagcacttccagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggtt |
311 |
Q |
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|||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28731277 |
cgagtcgattcatccgaacagcacttccggcggtgctccaaaagtattcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggtt |
28731178 |
T |
|
| Q |
312 |
gttgttcacggccttcaaggtt |
333 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
28731177 |
gttgttcacggccttcaaggtt |
28731156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 333
Target Start/End: Complemental strand, 38121903 - 38121582
Alignment:
| Q |
12 |
acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||| ||||||| |
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|
| T |
38121903 |
acttcccctgcttggaccggtcctttcaccattttcgctccctctgatgcatcgcttcgcacttgcttttcttgctctgttccgaatctccttcgtgaac |
38121804 |
T |
|
| Q |
112 |
acatcgttccaggtatattcaccagcgaataactccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc |
211 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| || ||||| |||||||||||||||||||| |||||||||||||| || |||||| ||||||||||||| |
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|
| T |
38121803 |
acatagttccaggtatattcaccatcgaatatcttcggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttc |
38121704 |
T |
|
| Q |
212 |
cgagtcgattcatccgaacagcacttccagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggtt |
311 |
Q |
| |
|
|||||||||||||| ||||| ||||||| || ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
38121703 |
cgagtcgattcatcagaacaacacttccggcagtgctccaaaagtcttcatcggaggcgttgagattactcaaccggatctattcaacaacggaatggtt |
38121604 |
T |
|
| Q |
312 |
gttgttcacggccttcaaggtt |
333 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
38121603 |
gttgttcacggccttcaaggtt |
38121582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 38608228 - 38608541
Alignment:
| Q |
20 |
tgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgtt |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
38608228 |
tgcttggaccggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgtt |
38608327 |
T |
|
| Q |
120 |
ccaggtatattcaccagcgaataactccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcga |
219 |
Q |
| |
|
|||||| ||||||| | ||| || | || ||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||| |
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|
| T |
38608328 |
ccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcga |
38608427 |
T |
|
| Q |
220 |
ttcatccgaacagcacttccagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgttca |
319 |
Q |
| |
|
||||| |||||| ||| || |||||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38608428 |
ttcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttca |
38608527 |
T |
|
| Q |
320 |
cggccttcaaggtt |
333 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38608528 |
cggccttcaaggtt |
38608541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 38793011 - 38793324
Alignment:
| Q |
20 |
tgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgtt |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38793011 |
tgcttggaccggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgtt |
38793110 |
T |
|
| Q |
120 |
ccaggtatattcaccagcgaataactccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcga |
219 |
Q |
| |
|
|||||| ||||||| | ||| || | || ||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||| |
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|
| T |
38793111 |
ccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcga |
38793210 |
T |
|
| Q |
220 |
ttcatccgaacagcacttccagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgttca |
319 |
Q |
| |
|
||||| |||||| ||| || |||||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38793211 |
ttcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttca |
38793310 |
T |
|
| Q |
320 |
cggccttcaaggtt |
333 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38793311 |
cggccttcaaggtt |
38793324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 31529431 - 31529204
Alignment:
| Q |
12 |
acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
31529431 |
acttcccctgcttggaccggtcctttcactattttcgctccctctgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaac |
31529332 |
T |
|
| Q |
112 |
acatcgttccaggtatattcaccagcgaataactccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc |
211 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
31529331 |
acatcgttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttc |
31529232 |
T |
|
| Q |
212 |
cgagtcgattcatccgaacagcacttcc |
239 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
31529231 |
cgagtcgattcatccgaacaacacttcc |
31529204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 51801499 - 51801272
Alignment:
| Q |
12 |
acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||| | ||| | | |||||| |||||||||| |||| |||||||||||||||||| |
|
|
| T |
51801499 |
acttcccctgcttggaccggtcctttcactattttcgctccctctgatacttcgcttcacacttgcttttcttgctgtgttccgaatctcctccgtgaac |
51801400 |
T |
|
| Q |
112 |
acatcgttccaggtatattcaccagcgaataactccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc |
211 |
Q |
| |
|
|||||||||||| ||||||||||| | |||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||| ||||||||| |
|
|
| T |
51801399 |
acatcgttccagatatattcaccatcaaatacctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaatcgtcacttc |
51801300 |
T |
|
| Q |
212 |
cgagtcgattcatccgaacagcacttcc |
239 |
Q |
| |
|
||| |||||||||||||||| ||||||| |
|
|
| T |
51801299 |
cgattcgattcatccgaacaacacttcc |
51801272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 12 - 238
Target Start/End: Original strand, 34875789 - 34876015
Alignment:
| Q |
12 |
acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||| ||||||| |||||| ||| | | |||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
34875789 |
acttcccctgcttggaccggtcctttcactatttttgctccctttgatgcttcgcttcacacttgcttttcttgctctgttccgaatctcctccgtgaac |
34875888 |
T |
|
| Q |
112 |
acatcgttccaggtatattcaccagcgaataactccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc |
211 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||||| ||||||| |
|
|
| T |
34875889 |
acatcgttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaaccatcacttc |
34875988 |
T |
|
| Q |
212 |
cgagtcgattcatccgaacagcacttc |
238 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
34875989 |
cgagtcgattcatccgaacaacacttc |
34876015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 34183 - 34114
Alignment:
| Q |
264 |
ggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgttcacggccttcaaggtt |
333 |
Q |
| |
|
||||| || ||||| || ||||| ||||| ||||||||||| ||||| ||| |||| ||||||||||||| |
|
|
| T |
34183 |
ggaggggtggagatcacgcaacctgatctcttcaacaacggcatggtggttattcatggccttcaaggtt |
34114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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