View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12535_low_12 (Length: 311)
Name: NF12535_low_12
Description: NF12535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12535_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 2470740 - 2470454
Alignment:
| Q |
11 |
cagagacaccttagtttgtacaaaaatttctgtcagtgtatttggatgagtcctttgatttatatcatcacttattttctttggactcgtcttcttttac |
110 |
Q |
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| T |
2470740 |
cagacacaccttagtttgtacaaaaatttctgtcagtgtatttggatgagtcctttgatttatatcatcacttattttctttggacttgtcttcttttac |
2470641 |
T |
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| Q |
111 |
cttgtacagccgctgctgacagaaaattctgtgtgctgcttctgcactgtagtctattgaattcagtgtagtctattaactcaaacatagataatagatt |
210 |
Q |
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| T |
2470640 |
cttgtacagccgctgctgacagaaaattctgtgtgctgcttctgcactgtagtctattgaattcagtgtagtctattaactcaaacatagataatagatt |
2470541 |
T |
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| Q |
211 |
atttttgtgaccgatcatatttaaaattcattgaattgatttgattcttatcataagaataagatacttactacctattcttgttag |
297 |
Q |
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| T |
2470540 |
atttttgtgaccgatcatatttaaaattcattgaattgatttgattcttatcataagaataagatacttactacctattcttgttag |
2470454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 2458817 - 2458750
Alignment:
| Q |
223 |
gatcatatttaaaattcattgaattgatttgattcttatcataagaataagatacttactacctattc |
290 |
Q |
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| T |
2458817 |
gatcatattttaaattcattgaattgatttgattcttatcataaaaataagatacttactacctattc |
2458750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 2498597 - 2498547
Alignment:
| Q |
240 |
attgaattgatttgattcttatcataagaataagatacttactacctattc |
290 |
Q |
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| T |
2498597 |
attgaattgatttgattcttaacataagaataagatacttactacctattc |
2498547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 43282068 - 43282130
Alignment:
| Q |
50 |
atttggatgagtcctttgatttatatcatcacttattttctttggactcgtcttcttttacctt |
113 |
Q |
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||||||| |||| ||||| |||||| || || ||||||||||||||| |||||||||||||||| |
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| T |
43282068 |
atttggacgagttctttgctttata-caacatttattttctttggacccgtcttcttttacctt |
43282130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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