View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12535_low_13 (Length: 290)

Name: NF12535_low_13
Description: NF12535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12535_low_13
NF12535_low_13
[»] chr8 (8 HSPs)
chr8 (15-275)||(5282454-5282714)
chr8 (45-273)||(11833370-11833598)
chr8 (189-275)||(5290215-5290301)
chr8 (169-271)||(5306686-5306787)
chr8 (187-275)||(14949376-14949464)
chr8 (187-275)||(15125911-15125999)
chr8 (194-275)||(5313890-5313971)
chr8 (194-275)||(5351531-5351612)
[»] chr3 (4 HSPs)
chr3 (216-270)||(22740807-22740861)
chr3 (216-269)||(22739965-22740018)
chr3 (216-270)||(22726965-22727019)
chr3 (216-270)||(22750284-22750338)
[»] chr5 (4 HSPs)
chr5 (216-270)||(14240567-14240621)
chr5 (216-270)||(14372737-14372791)
chr5 (216-270)||(41451576-41451630)
chr5 (218-270)||(41438409-41438461)
[»] chr1 (1 HSPs)
chr1 (224-270)||(30061684-30061730)
[»] chr6 (1 HSPs)
chr6 (194-275)||(31526343-31526424)


Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 5282454 - 5282714
Alignment:
Q  15 agatgaactgggggaatcaccctatgagaataggccgtgtagtcccaaatgtatccgttgcccaacacacacacaatatgatttaaataacttatgtggg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5282454 agatgaactgggggaatcaccctatgagaataggccgtgtagtcccaaatgtatccgttgcccaatacacacacaatatgatttaaataacttatgtggg 5282553  T
Q  115 acaaaggaattaatacaattaaacaatttataggaatgcaagatgtatttgtccttaacatgataaaacgttatatttgcttacattgaatagtattgca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5282554 acaaaggaattaatacaattaaacaatttataggaatgcaagatgtatttgtccttaacatgataaaacgttatatttgcttacattgaatagtattgca 5282653  T
Q  215 gctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcatcattgt 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5282654 gctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcatcattgt 5282714  T

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Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 45 - 273
Target Start/End: Complemental strand, 11833598 - 11833370
Alignment:
Q  45 taggccgtgtagtcccaaatgtatccgttgcccaacacacacacaatatgatttaaataacttatgtgggacaaaggaattaatacaattaaacaattta 144  Q
    ||||| || ||| ||||||||||   ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  11833598 taggctgtatagccccaaatgtaattgttgcccaatacatacacaatatgacttaaataacttatgtgggacaaaggaattaataaaattcaacaattta 11833499  T
Q  145 taggaatgcaagatgtatttgtccttaacatgataaaacgttatatttgcttacattgaatagtattgcagctgtatgagcatcaactgcactaaaagga 244  Q
    | |||   || ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||    
T  11833498 ttggaccacaggatgtatttttccttaacatgataaaatgttatatttgcttacattgaaaagtattgctgctgtatgagcatcaactgcactgaaagga 11833399  T
Q  245 tcatcaaggagataaatatcagcatcatt 273  Q
    |||||||||||||| ||||| ||||||||    
T  11833398 tcatcaaggagatagatatctgcatcatt 11833370  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 189 - 275
Target Start/End: Original strand, 5290215 - 5290301
Alignment:
Q  189 atttgcttacattgaatagtattgcagctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcatcattgt 275  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  5290215 attttcttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaaggagatagatatcagcatcattgt 5290301  T

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Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 169 - 271
Target Start/End: Complemental strand, 5306787 - 5306686
Alignment:
Q  169 ttaacatgataaaacgttatatttgcttacattgaatagtattgcagctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagca 268  Q
    |||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||    
T  5306787 ttaacatggtaaaa-gttatattttcttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaaggagatagatatctgca 5306689  T
Q  269 tca 271  Q
    |||    
T  5306688 tca 5306686  T

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Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 14949376 - 14949464
Alignment:
Q  187 atatttgcttacattgaatagtattgcagctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcatcattgt 275  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||    
T  14949376 atatttacttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaagaagatagatatcagcatcattgt 14949464  T

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Target: chr8; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 15125999 - 15125911
Alignment:
Q  187 atatttgcttacattgaatagtattgcagctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcatcattgt 275  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||    
T  15125999 atatttacttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaagaagatagatatcagcatcattgt 15125911  T

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Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 275
Target Start/End: Complemental strand, 5313971 - 5313890
Alignment:
Q  194 cttacattgaatagtattgcagctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcatcattgt 275  Q
    ||||||||||| || || |||||||| || |||||||| ||||| ||||||||||| |||||||| ||||||||||||||||    
T  5313971 cttacattgaacagaatagcagctgtgtgtgcatcaacagcactgaaaggatcatcgaggagatagatatcagcatcattgt 5313890  T

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Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 275
Target Start/End: Original strand, 5351531 - 5351612
Alignment:
Q  194 cttacattgaatagtattgcagctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcatcattgt 275  Q
    |||||||  ||||| |||||||| ||||| ||||| |||||||||||||| |||||||| ||||| | ||||||||||||||    
T  5351531 cttacatgaaatagaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgt 5351612  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 22740861 - 22740807
Alignment:
Q  216 ctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcatc 270  Q
    ||||||||||||||||||||||||| |||||||| || ||||| |||||||||||    
T  22740861 ctgtatgagcatcaactgcactaaagggatcatcgagcagatatatatcagcatc 22740807  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 22740018 - 22739965
Alignment:
Q  216 ctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcat 269  Q
    ||||||||||||||||||||||||| ||||| || || ||||||||||||||||    
T  22740018 ctgtatgagcatcaactgcactaaagggatcgtcgagcagataaatatcagcat 22739965  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 22726965 - 22727019
Alignment:
Q  216 ctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcatc 270  Q
    ||||||||||||||||||||||||| ||||| || || ||||| |||||||||||    
T  22726965 ctgtatgagcatcaactgcactaaagggatcgtcgagcagatatatatcagcatc 22727019  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 22750284 - 22750338
Alignment:
Q  216 ctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcatc 270  Q
    |||||||||||||||  |||||||| ||||||||||  ||||| |||||||||||    
T  22750284 ctgtatgagcatcaagagcactaaacggatcatcaaatagatatatatcagcatc 22750338  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 14240567 - 14240621
Alignment:
Q  216 ctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcatc 270  Q
    ||||||||||||| || |||||||||||||||||||  ||||| |||||||||||    
T  14240567 ctgtatgagcatccacagcactaaaaggatcatcaaatagatagatatcagcatc 14240621  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 14372791 - 14372737
Alignment:
Q  216 ctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcatc 270  Q
    ||||||||||||| || |||||||||||||||||||  ||||| |||||||||||    
T  14372791 ctgtatgagcatccacggcactaaaaggatcatcaaatagatatatatcagcatc 14372737  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 41451576 - 41451630
Alignment:
Q  216 ctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcatc 270  Q
    |||||||||||||||| |||||||||||||| ||||  ||||| |||||||||||    
T  41451576 ctgtatgagcatcaacagcactaaaaggatcgtcaaatagatagatatcagcatc 41451630  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 41438409 - 41438461
Alignment:
Q  218 gtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcatc 270  Q
    ||||||||||| || |||||||||||||||||||  ||||| |||||||||||    
T  41438409 gtatgagcatccacagcactaaaaggatcatcaaatagatagatatcagcatc 41438461  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 30061730 - 30061684
Alignment:
Q  224 gcatcaactgcactaaaaggatcatcaaggagataaatatcagcatc 270  Q
    ||||||| ||||||||| || ||||||||||||||||||||||||||    
T  30061730 gcatcaagtgcactaaaggggtcatcaaggagataaatatcagcatc 30061684  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 275
Target Start/End: Original strand, 31526343 - 31526424
Alignment:
Q  194 cttacattgaatagtattgcagctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcatcattgt 275  Q
    ||||||||||| || || ||||| || || || |||||||| || ||||| |||||||||||||| ||||||||||| ||||    
T  31526343 cttacattgaacagaatagcagcagtgtgcgcgtcaactgcgctgaaagggtcatcaaggagatagatatcagcatcgttgt 31526424  T

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