View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12535_low_17 (Length: 247)

Name: NF12535_low_17
Description: NF12535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12535_low_17
NF12535_low_17
[»] chr1 (18 HSPs)
chr1 (1-192)||(36728720-36728911)
chr1 (2-192)||(47140753-47140944)
chr1 (4-192)||(29678289-29678478)
chr1 (11-192)||(48379068-48379248)
chr1 (1-192)||(17562753-17562944)
chr1 (1-192)||(31585200-31585391)
chr1 (39-192)||(11894257-11894410)
chr1 (39-192)||(31292765-31292915)
chr1 (81-192)||(25987355-25987466)
chr1 (8-160)||(19884384-19884536)
chr1 (81-179)||(38264380-38264478)
chr1 (81-173)||(2191843-2191935)
chr1 (85-155)||(25294014-25294084)
chr1 (1-64)||(25987458-25987521)
chr1 (81-128)||(52252710-52252757)
chr1 (3-64)||(2191788-2191851)
chr1 (133-179)||(15378867-15378913)
chr1 (2-64)||(38264326-38264388)
[»] chr6 (13 HSPs)
chr6 (1-192)||(8576717-8576908)
chr6 (1-179)||(10788456-10788634)
chr6 (1-191)||(35167258-35167448)
chr6 (1-192)||(7622331-7622516)
chr6 (2-174)||(28582126-28582297)
chr6 (7-150)||(34433176-34433319)
chr6 (63-160)||(642094-642191)
chr6 (81-189)||(7245534-7245643)
chr6 (2-179)||(10408936-10409112)
chr6 (1-100)||(17930224-17930323)
chr6 (1-51)||(642009-642059)
chr6 (140-192)||(34433713-34433765)
chr6 (38-102)||(5107138-5107202)
[»] chr5 (12 HSPs)
chr5 (1-192)||(39207089-39207280)
chr5 (3-192)||(3926161-3926350)
chr5 (1-192)||(35188565-35188756)
chr5 (1-192)||(23429201-23429392)
chr5 (1-192)||(2209501-2209688)
chr5 (52-155)||(42878917-42879020)
chr5 (81-192)||(33742765-33742878)
chr5 (75-192)||(26621341-26621458)
chr5 (39-160)||(39800427-39800548)
chr5 (119-192)||(42836947-42837020)
chr5 (2-66)||(42837602-42837666)
chr5 (47-155)||(40056971-40057073)
[»] chr2 (9 HSPs)
chr2 (1-192)||(5110175-5110366)
chr2 (1-192)||(5704570-5704761)
chr2 (1-192)||(13807512-13807703)
chr2 (1-192)||(31575913-31576104)
chr2 (2-192)||(5938695-5938885)
chr2 (16-192)||(45151225-45151401)
chr2 (1-131)||(13626285-13626416)
chr2 (58-192)||(45458419-45458554)
chr2 (39-155)||(42625039-42625155)
[»] chr3 (16 HSPs)
chr3 (1-192)||(5295175-5295366)
chr3 (1-192)||(21288064-21288254)
chr3 (1-192)||(25874676-25874867)
chr3 (5-160)||(3778883-3779038)
chr3 (1-192)||(27926604-27926784)
chr3 (1-192)||(13825875-13826066)
chr3 (81-174)||(48251717-48251810)
chr3 (39-160)||(12149017-12149138)
chr3 (76-192)||(26187889-26188005)
chr3 (2-102)||(32847582-32847682)
chr3 (81-147)||(36584410-36584476)
chr3 (3-73)||(48251487-48251557)
chr3 (83-124)||(13084754-13084795)
chr3 (39-118)||(37341419-37341498)
chr3 (2-64)||(36584468-36584530)
chr3 (8-99)||(32836738-32836829)
[»] chr8 (10 HSPs)
chr8 (2-192)||(8227217-8227407)
chr8 (1-192)||(13355770-13355961)
chr8 (3-192)||(9762901-9763090)
chr8 (5-192)||(7968407-7968596)
chr8 (3-170)||(11481406-11481573)
chr8 (42-192)||(36582901-36583051)
chr8 (3-174)||(6870603-6870774)
chr8 (2-192)||(31005972-31006164)
chr8 (2-109)||(7987176-7987282)
chr8 (39-98)||(7987283-7987342)
[»] chr4 (15 HSPs)
chr4 (1-192)||(38951589-38951780)
chr4 (1-192)||(41039302-41039492)
chr4 (1-192)||(22278281-22278472)
chr4 (1-192)||(8819283-8819474)
chr4 (1-192)||(40714823-40715014)
chr4 (1-192)||(42555280-42555471)
chr4 (1-192)||(51357137-51357327)
chr4 (3-187)||(23626815-23626996)
chr4 (24-192)||(29116989-29117157)
chr4 (5-178)||(43624395-43624570)
chr4 (1-192)||(19841709-19841888)
chr4 (81-192)||(17120334-17120445)
chr4 (1-192)||(36464802-36464986)
chr4 (2-64)||(17120280-17120342)
chr4 (81-148)||(40571958-40572026)
[»] chr7 (21 HSPs)
chr7 (3-187)||(23809649-23809833)
chr7 (2-192)||(5972929-5973118)
chr7 (7-187)||(2944053-2944233)
chr7 (2-192)||(11039159-11039350)
chr7 (1-174)||(36298760-36298933)
chr7 (2-153)||(28636373-28636524)
chr7 (8-192)||(30541465-30541649)
chr7 (5-192)||(7767031-7767218)
chr7 (2-192)||(25502108-25502288)
chr7 (3-187)||(31457228-31457420)
chr7 (19-192)||(38440431-38440604)
chr7 (5-189)||(33189362-33189542)
chr7 (2-160)||(22519172-22519329)
chr7 (81-192)||(15954686-15954797)
chr7 (38-160)||(1053127-1053249)
chr7 (104-192)||(40910567-40910655)
chr7 (82-192)||(47924937-47925054)
chr7 (39-155)||(27336930-27337046)
chr7 (82-160)||(31758962-31759041)
chr7 (7-71)||(15954066-15954130)
chr7 (2-107)||(14753978-14754083)
[»] scaffold0155 (1 HSPs)
scaffold0155 (1-188)||(6860-7047)
[»] scaffold0041 (1 HSPs)
scaffold0041 (104-192)||(62439-62527)
[»] scaffold0115 (1 HSPs)
scaffold0115 (39-155)||(22052-22168)
[»] scaffold0057 (2 HSPs)
scaffold0057 (81-120)||(66580-66619)
scaffold0057 (3-64)||(66611-66672)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 36728720 - 36728911
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||||||||  ||||| |||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  36728720 gctttgtttttgttgaatatgatgaactttacatgtgtttttgttaaatcaaataactttatttttcttaaatgtaagagactttatttatgtttttgtt 36728819  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  36728820 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacatttgtttctaaa 36728911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 2 - 192
Target Start/End: Complemental strand, 47140944 - 47140753
Alignment:
Q  2 ctttgtttttgttgaatatgatg-agttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  47140944 ctttgtttttgttgaatatgatggagttttacttatgcttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttatgtttttgtt 47140845  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||||| ||||||||| ||||||||| || ||||||||||||||||||| |||||  ||||||||||||||||| ||||||||||||    
T  47140844 gagtcaatgatttttgttgttgttgtaatgtatgtatattatgttttgctaaaatgaaaagaaaatgcatgtgaagaacctttgtttctaaa 47140753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 29678289 - 29678478
Alignment:
Q  4 ttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgag 103  Q
    ||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||| |||| || |||||||||| ||||||||||    
T  29678289 ttgtttttgttgaatatgatgagctttacttatacttttgttaaatcaaagaactttatttttattaaatgtaagggaatttatttatgattttgttgag 29678388  T
Q  104 tcaatgatctttgttgttattgtaatgtgtggatattatg-ttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||||||||||||||||||||||| || ||| |||| |||| ||||||||||||  ||||||||||||||||| ||||||||||||    
T  29678389 tcaatgatctttgttgttattgtaatgtatgaataatatgtttttactaaaaagaaaagaaaatgcatgtgaagaacttttgtttctaaa 29678478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 48379068 - 48379248
Alignment:
Q  11 tgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatga 110  Q
    |||||||||||||| ||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  48379068 tgttgaatatgatg-gttttacttatgtttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttatgtttttgttgagtcaatga 48379166  T
Q  111 tctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||||||||||||||| ||  ||| ||||||||||||||||||||  |||| ||| |||||||| ||||||||||||    
T  48379167 tctttgttgttattgtaatgtatgactatgatgttttgctaaaaagaaaagaaaatacatatgaagaacctttgtttctaaa 48379248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 17562753 - 17562944
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||||| |||||  |  | |||||||||| ||||||||||    
T  17562753 gctttgtttttgttgaatatgatgagctttacttatgtttttgttaaatcaaataactttatttttattaaacgtcggggactttatttctgtttttgtt 17562852  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    | ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||  ||||||||||||| |   ||||||||||||    
T  17562853 gggtcaatgatctttgttgttattgtaatgtatgtatattatgttttgctaaaaagaaaagaaaatgcatgtgaatactctttgtttctaaa 17562944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 31585200 - 31585391
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||||||||| ||||||| || ||||||||||| ||| |||||||||||| |||||  |  | |||||||||||||||||||||    
T  31585200 gctttgtttttgttgaatatgatgagctttacttatgtttttgttaaattaaataactttatttttattaaacgtcggggactttatttatgtttttgtt 31585299  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    | ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||  ||||||||||||| |   ||||||||||||    
T  31585300 gggtcaatgatctttgttgttattgtaatgtatgtatattatgttttgctaaaaagaaaagaaaatgcatgtgaatactctttgtttctaaa 31585391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 11894410 - 11894257
Alignment:
Q  39 ttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggata 138  Q
    ||||||||||||||| |||||||||||| |||||| ||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| || |||    
T  11894410 ttttgttaaatcaaataactttatttttattaaatgtaagcaactttatttatgtttttgttgagtcaatgatctttgttgttattataatgtatgaata 11894311  T
Q  139 ttatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||||| |||||||||||  |||||||| |||||||| ||||| ||||||    
T  11894310 ttatgttttgttaaaaagaaaagaaaatgcatatgaagaacctttgtctctaaa 11894257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 31292765 - 31292915
Alignment:
Q  39 ttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggata 138  Q
    ||||||||||||||| |||||||||||| ||| || |||| ||||||||||||||||||| |||||||||||||   ||||||||| |||||| || |||    
T  31292765 ttttgttaaatcaaataactttatttttgttacatgtaagggactttatttatgtttttgctgagtcaatgatc---gttgttattataatgtatgaata 31292861  T
Q  139 ttatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||||||| ||||    
T  31292862 ttatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttgtttttaaa 31292915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 81 - 192
Target Start/End: Complemental strand, 25987466 - 25987355
Alignment:
Q  81 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaaca 180  Q
    |||||||||||||||||||||||| |||||||||| |||||||| |||||| || |||||||||||||||||||||||||  |||||||||||||||||     
T  25987466 actttatttatgtttttgttgagttaatgatcttttttgttattttaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacc 25987367  T
Q  181 tttgtttctaaa 192  Q
    ||||||||||||    
T  25987366 tttgtttctaaa 25987355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 19884384 - 19884536
Alignment:
Q  8 ttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaa 107  Q
    ||||||||||||||||||| | || || | ||||||| |||||||||||  |||||| | |||||  ||||  | ||||||||| |||||||||||||||    
T  19884384 ttttgttgaatatgatgagctatatttatacttttgtcaaatcaaagaatattatttgtattaaaagtaaggaattttatttatatttttgttgagtcaa 19884483  T
Q  108 tgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaa 160  Q
    ||||||||||| |||||||||||| || |||||||||||||||||||||||||    
T  19884484 tgatctttgttattattgtaatgtatgaatattatgttttgctaaaaagaaaa 19884536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 38264380 - 38264478
Alignment:
Q  81 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaac 179  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || |  |||||||||||| ||||    
T  38264380 actttatttatatttttgttgagtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaataatagaaaatgcatgtgatgaac 38264478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 81 - 173
Target Start/End: Original strand, 2191843 - 2191935
Alignment:
Q  81 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtg 173  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||| ||||||||||||  |||||||||||    
T  2191843 actttatttatgtttttgttgagtcaatgatttttgttgttattgtaatgtagtgatattatgttttactaaaaagaaaagaaaatgcatgtg 2191935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 25294014 - 25294084
Alignment:
Q  85 tatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaa 155  Q
    ||||||||||||| ||||||||| ||||||||||||| || |||| | | |||||||||||||||||||||    
T  25294014 tatttatgtttttattgagtcaaggatctttgttgttgttataatctatcgatattatgttttgctaaaaa 25294084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25987521 - 25987458
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttattt 64  Q
    |||||||||||||||||||||| ||| ||||||| || |||||||| ||| |||||||||||||    
T  25987521 gctttgtttttgttgaatatgacgagctttacttatgtttttgttatatctaagaactttattt 25987458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 52252757 - 52252710
Alignment:
Q  81 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaa 128  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  52252757 actttatttatgtttttattgagtcaaagatctttgttgttattgtaa 52252710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 2191788 - 2191851
Alignment:
Q  3 tttgtttttgttgaatatgatgag--ttttacttgtgcttttgttaaatcaaagaactttattt 64  Q
    ||||||||||||||||||||||||  ||||| || | ||||||| |||||||||||||||||||    
T  2191788 tttgtttttgttgaatatgatgagagttttatttatacttttgtcaaatcaaagaactttattt 2191851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 15378913 - 15378867
Alignment:
Q  133 tggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaac 179  Q
    ||||||||||||||||||||||||||||  |||||||||||| ||||    
T  15378913 tggatattatgttttgctaaaaagaaaagaaaatgcatgtgatgaac 15378867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 38264326 - 38264388
Alignment:
Q  2 ctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttattt 64  Q
    |||||||||  ||||||||||| |  |||| || ||||||||| |||||||||||||||||||    
T  38264326 ctttgttttaattgaatatgataatctttatttatgcttttgtcaaatcaaagaactttattt 38264388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 8576908 - 8576717
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||||| ||||||  |||||||||||||||||||||||||    
T  8576908 gctttgtttttgttgaatatgatgagctttacttatgtttttgttaaatcaaataactttatttttattaaattgaagagactttatttatgtttttgtt 8576809  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  8576808 gagtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaa 8576717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 10788634 - 10788456
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||||||||||||| ||||||||| ||| || ||||||||||||||||||||||||||    
T  10788634 gctttgtttttgttgaatatgatgaactttacttatgcttttgttaaatcaaagaaatttatttttattatatgtaagagactttatttatgtttttgtt 10788535  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaac 179  Q
    || |||||||||||||||||||||||||||| || ||||| |||||||||||||||||||  |||||||||||||||||    
T  10788534 gactcaatgatctttgttgttattgtaatgtatgaatattctgttttgctaaaaagaaaagaaaatgcatgtgaagaac 10788456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 35167258 - 35167448
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    ||||||||||||||||||||||||| |||||||||  |||||||||||||||| ||| |||||||| |||||| | ||||||||||||||||||||||||    
T  35167258 gctttgtttttgttgaatatgatgacttttacttgaacttttgttaaatcaaataacattatttttattaaatgtgagagactttatttatgtttttgtt 35167357  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaa 191  Q
     ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||  |||||||| ||| |||| |||||||||||    
T  35167358 aagtcaatgatctttgttgttattgtaatgtacggatattatgttttgctaaaaagaaaagaaaatgcatatgatgaacctttgtttctaa 35167448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 7622516 - 7622331
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||||||||| |||| || || |||||||||||||||||||||||| ||| |||||| |||  ||| |||||||||||||||||    
T  7622516 gctttgtttttgttgaatatgatgagattta-ttatgtttttgttaaatcaaagaactttatctttattaaatgtaaaggacattatttatgtttttgtt 7622418  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||||||||||     ||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||| | ||||||||||    
T  7622417 gagtcaatgatcttt-----tattgtaatgtatggatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctctgtttctaaa 7622331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 174
Target Start/End: Complemental strand, 28582297 - 28582126
Alignment:
Q  2 ctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttg 101  Q
    |||||| |||||||||||||||||  |||| || || |||||||||||||||||| ||||| ||| |||||| |||||  |||||||||||||||| | |    
T  28582297 ctttgtatttgttgaatatgatgaactttatttatgtttttgttaaatcaaagaaatttatatttattaaatgtaagaagctttatttatgtttttatcg 28582198  T
Q  102 agtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtga 174  Q
    |||||||||| ||||||| |||| |||| | ||||||||||||||||||||||||||||  ||||||||||||    
T  28582197 agtcaatgatttttgttgctattttaat-tatggatattatgttttgctaaaaagaaaagaaaatgcatgtga 28582126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 34433176 - 34433319
Alignment:
Q  7 tttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtca 106  Q
    ||||| || |||||||||||||||||||    ||||||||||| ||| |||||||||| | |||||| ||||||||||||||||  |||||||| |||||    
T  34433176 tttttttttaatatgatgagttttacttaaatttttgttaaattaaataactttatttgtattaaatgtaagagactttatttacatttttgttaagtca 34433275  T
Q  107 atgatctttgttgttattgtaatgtgtggatattatgttttgct 150  Q
    ||||||||||||||||||||||||| | ||||||||||||||||    
T  34433276 atgatctttgttgttattgtaatgtatagatattatgttttgct 34433319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 160
Target Start/End: Original strand, 642094 - 642191
Alignment:
Q  63 ttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaa 160  Q
    |||| |||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||    
T  642094 ttttattaaatgtaaaagactttatttatgtttttgttaagtcaatgatctttgttgttattgtaatgtatgaatattttgttttgctaaaaagaaaa 642191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 7245534 - 7245643
Alignment:
Q  81 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgct-aaaaagaaaaacaaatgcatgtgaagaac 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||| ||||| |||||  ||||||||||    
T  7245534 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtatgaatattatgttttactaaaaaaaaaaaaaaaatgtttgtgaagaac 7245633  T
Q  180 atttgtttct 189  Q
     |||||||||    
T  7245634 ctttgtttct 7245643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 10408936 - 10409112
Alignment:
Q  2 ctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttg 101  Q
    |||| ||| |||| ||||||||||  |||| || | |||| |||||||||||||| ||||  | | | |||| ||||   ||||| |||||||||||||     
T  10408936 ctttttttatgttaaatatgatgaactttatttatactttagttaaatcaaagaagtttaaatatatcaaatgtaaggagctttagttatgtttttgtta 10409035  T
Q  102 agtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaac 179  Q
    |||||||||||| |||||||||| |||||  || ||||||| |||||||||||||||||| |||||||||||| ||||    
T  10409036 agtcaatgatctatgttgttattataatgcatgaatattatattttgctaaaaagaaaaa-aaatgcatgtgatgaac 10409112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 17930224 - 17930323
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||||||||  |||| || || ||||||| |||||||||||||| |||||||||||| | |   ||||||||||| ||||||||    
T  17930224 gctttgtttttgttgaatatgatgaactttatttatgtttttgttgaatcaaagaactttgtttttcttaaatgtcatgaactttatttatatttttgtt 17930323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 642009 - 642059
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatca 51  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  642009 gctttgtttttgttgaatatgatgagttttacttaagcttttgttaaatca 642059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 34433713 - 34433765
Alignment:
Q  140 tatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||||||||||||||||  ||| |||| ||| |||||||||||||||||    
T  34433713 tatgttttgctaaaaagaaaagaaaacgcatatgatgaacatttgtttctaaa 34433765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 5107202 - 5107138
Alignment:
Q  38 cttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 102  Q
    |||||||| |||||| ||||||| ||||| |||||||| |   |||| |||||||||||||||||    
T  5107202 cttttgttgaatcaaggaactttgtttttgttaaatatgatgaacttgatttatgtttttgttga 5107138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 39207089 - 39207280
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||    
T  39207089 gctttgtttttgttgaatatgatgagttgtacttatgtttttgttaaatcaaagaactttatttttattaaatgtaagggactttatttatgtttttgtt 39207188  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    | ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||  || |||||||||||||| ||||||||||||    
T  39207189 gtgtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaattgcatgtgaagaacctttgtttctaaa 39207280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 3926350 - 3926161
Alignment:
Q  3 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 102  Q
    |||||||  ||||||||||||||| ||||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  3926350 tttgtttacgttgaatatgatgagctttactcatgcttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttatgtttttgttga 3926251  T
Q  103 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  3926250 gtcaatgatttttgttgttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaa 3926161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 35188565 - 35188756
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    ||||| ||| |||||||||| ||||| ||||||| || ||||||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||    
T  35188565 gctttatttatgttgaatataatgagctttacttatgattttgttaaatcaaataactttatttttattaaatgtaagggactttatttatgtttttgtt 35188664  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||  |||| |||||||| ||| ||||||||||||    
T  35188665 gagtcaatgatctttgttgttattgtaatttatgaatattatgttttgctaaaaagaaaagaaaatacatgtgaataacctttgtttctaaa 35188756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 23429392 - 23429201
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||  |||||||||| ||||||||||||  | ||||||||||||||| |||||||||||| |||||| |||  |||||||||||||||||||||    
T  23429392 gctttgtttacgttgaatatggtgagttttacttacgtttttgttaaatcaaataactttatttttattaaatgtaacggactttatttatgtttttgtt 23429293  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||| ||||||||||||||||||||| || | || |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  23429292 gagtaaatgatctttgttgttattgtgatatatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaa 23429201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 2209688 - 2209501
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    ||||||||||||||||||||||| || |||| ||     ||| | | ||||||||||||||||||| |||||||||||  || ||| |||||||||||||    
T  2209688 gctttgtttttgttgaatatgataagctttatttaa---tttttcagatcaaagaactttatttttattaaatataaggaacgttaattatgtttttgtt 2209592  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||||||||||| ||||||| | ||||  |||||||||||||||||||||||||||  |||||||||||| |||| ||||||| ||||    
T  2209591 gagtcaatgatctttg-tgttattatgatgtacggatattatgttttgctaaaaagaaaagaaaatgcatgtgatgaacttttgtttttaaa 2209501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 42878917 - 42879020
Alignment:
Q  52 aagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgcta 151  Q
    ||||||||||||||| |||| | |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||  ||||||||    
T  42878917 aagaactttatttttattaagtgtaagggactttatttatgtttttgttgagttaatgatctttgttgttattgtaatgtatgaatattacattttgcta 42879016  T
Q  152 aaaa 155  Q
    ||||    
T  42879017 aaaa 42879020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 33742765 - 33742878
Alignment:
Q  81 actttatttat-gtttttgttgagtcaatgat-ctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaa 178  Q
    ||||||||||| |||||| ||||||||||||| |||| ||||||||||||||| || ||||||||||||| |||||||||||  ||||||||||||||||    
T  33742765 actttatttattgtttttattgagtcaatgattctttattgttattgtaatgtatgaatattatgttttgttaaaaagaaaagaaaatgcatgtgaagaa 33742864  T
Q  179 catttgtttctaaa 192  Q
    | ||||||||||||    
T  33742865 cctttgtttctaaa 33742878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 26621458 - 26621341
Alignment:
Q  75 taagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtga 174  Q
    ||||| |||||||||||||||||||||||||||| || ||| ||||||||||||||| || |||||||| ||||| ||||||||||  ||||  ||||||    
T  26621458 taagaaactttatttatgtttttgttgagtcaataattttttttgttattgtaatgtatgaatattatgctttgcaaaaaagaaaagaaaatatatgtga 26621359  T
Q  175 agaacatttgtttctaaa 192  Q
     |||| ||||||| ||||    
T  26621358 tgaacttttgtttttaaa 26621341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 39800427 - 39800548
Alignment:
Q  39 ttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggata 138  Q
    ||||||| |||||||||| ||||||| | |||||| ||    ||||||||||||||||| ||||||||| ||||||||||||| || |||| | | ||||    
T  39800427 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatttatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 39800526  T
Q  139 ttatgttttgctaaaaagaaaa 160  Q
    ||||||||||||||||| ||||    
T  39800527 ttatgttttgctaaaaaaaaaa 39800548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 42837020 - 42836947
Alignment:
Q  119 gttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||||||| || |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  42837020 gttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaa 42836947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 42837666 - 42837602
Alignment:
Q  2 ctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttattttt 66  Q
    |||||||| |||||||||||||||| ||||||| || ||||||||||||||||||||||||||||    
T  42837666 ctttgtttatgttgaatatgatgagctttacttatgtttttgttaaatcaaagaactttattttt 42837602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 155
Target Start/End: Complemental strand, 40057073 - 40056971
Alignment:
Q  47 aatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttt 146  Q
    |||||||||| ||||||| | |||||| ||    ||||||||||||||||| ||||||||| ||| ||||||||| || |||      ||||||||||||    
T  40057073 aatcaaagaattttatttctattaaatgtagtgaactttatttatgtttttattgagtcaaggatttttgttgttgttataa------gatattatgttt 40056980  T
Q  147 tgctaaaaa 155  Q
    |||||||||    
T  40056979 tgctaaaaa 40056971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 5110366 - 5110175
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||||||||||||||||| |  ||||||||||||||| |||||||||||| |||||| |||| ||| |||||||||||||||||    
T  5110366 gctttgtttttgttgaatatgatgagttttacttatatttttgttaaatcaaataactttatttttattaaatgtaagggacattatttatgtttttgtt 5110267  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  5110266 gagtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaa 5110175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 5704761 - 5704570
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||||| |||||| |||| |||||||||||| ||||||||    
T  5704761 gctttgtttttgttgaatatgatgagctttacttatgtttttgttaaatcaaataactttatttttattaaatgtaagtgactttatttatatttttgtt 5704662  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||  ||||||||||||||||| ||||||||||||    
T  5704661 gagtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaataaaagaaaatgcatgtgaagaacctttgtttctaaa 5704570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 13807703 - 13807512
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    ||||||||| |||||||||||||||  ||||||| || ||||| |||||||||||||||||||||| || ||| ||||||||||||||||||||||||||    
T  13807703 gctttgtttatgttgaatatgatgaactttacttatgtttttgctaaatcaaagaactttatttttattgaatgtaagagactttatttatgtttttgtt 13807604  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||  ||||||||||||||||| ||||||||||||    
T  13807603 gagtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaacagaaaagaaaatgcatgtgaagaacctttgtttctaaa 13807512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 31575913 - 31576104
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||| |||| |||||||||||||||  ||||||| || ||||||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||    
T  31575913 gcttggtttatgttgaatatgatgaactttacttatgtttttgttaaatcaaaaaactttatttttattaaatgtaagggactttatttatgtttttgtt 31576012  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  31576013 gagtcaatgatctttgttattattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaa 31576104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 192
Target Start/End: Complemental strand, 5938885 - 5938695
Alignment:
Q  2 ctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttg 101  Q
    ||||||||||||||||||||||||  ||||||| |  ||||||||||||||| |||||||||||| |||||| |||| ||||||||||||||||||||||    
T  5938885 ctttgtttttgttgaatatgatgaactttacttatatttttgttaaatcaaataactttatttttattaaatgtaagggactttatttatgtttttgttg 5938786  T
Q  102 agtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||  |||||||||||||||||  |||||||||||    
T  5938785 agtcaatgatctttgttgttattgtaatgtatgaatactatgttttgctaaaaagaaaagaaaatgcatgtgaagaaccattgtttctaaa 5938695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 45151225 - 45151401
Alignment:
Q  16 aatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatcttt 115  Q
    ||||||||||| ||||||| |  |||||||||||||||||| ||||||||| |||||| |||| |||||| |||||||||||||||| ||||||||||||    
T  45151225 aatatgatgagctttacttatatttttgttaaatcaaagaattttatttttattaaatgtaagggactttgtttatgtttttgttgaatcaatgatcttt 45151324  T
Q  116 gttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  45151325 gttgttattgtaatgtatgaatattatgttttgctaaaaagaaaaaaaaatgcatgtgaagaacctttgtctctaaa 45151401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 13626285 - 13626416
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgctttt-gttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgt 99  Q
    ||||||||||||| |||||||||||  ||||||| || |||| |||||||| ||||||||||||||| |||||| | || ||||||||||||||||||||    
T  13626285 gctttgtttttgtcgaatatgatgaactttacttatgttttttgttaaatcgaagaactttatttttattaaatgttagggactttatttatgtttttgt 13626384  T
Q  100 tgagtcaatgatctttgttgttattgtaatgt 131  Q
    ||||||||||||||||| ||||||||||||||    
T  13626385 tgagtcaatgatctttggtgttattgtaatgt 13626416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 192
Target Start/End: Original strand, 45458419 - 45458554
Alignment:
Q  58 tttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttt-tgctaaaaag 156  Q
    ||||||||| ||||| | || | |||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| |  ||||||     
T  45458419 tttatttttattaaacaaaacaaactttatttatgtttttgttgaatcaatgatctttgttgttatggtaatgtatggatattatgtttctcttaaaaaa 45458518  T
Q  157 aaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||| |||  ||||||| |||| ||||||| ||||    
T  45458519 aaaaaaaaagacatgtgatgaacttttgtttttaaa 45458554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 42625039 - 42625155
Alignment:
Q  39 ttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggata 138  Q
    ||||||| |||||||||| ||||||| | |||||| ||    ||||||||||||||||| ||||||||| ||||||||||||| || |||| | | ||||    
T  42625039 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatttatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 42625138  T
Q  139 ttatgttttgctaaaaa 155  Q
    |||||||||||||||||    
T  42625139 ttatgttttgctaaaaa 42625155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 5295366 - 5295175
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||||||||| |||| || || ||||||||||||||| |||||||||||  |||||| |||| |||||||||||||||||||||    
T  5295366 gctttgtttttgttgaatatgatgagctttagttatgtttttgttaaatcaaataactttattttaattaaatgtaagggactttatttatgtttttgtt 5295267  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||  ||||| ||||||||||| ||||||||||||    
T  5295266 gagtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgtatgtgaagaacttttgtttctaaa 5295175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 21288254 - 21288064
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    ||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||    
T  21288254 gctttgtttttgttgaatatgatga-ttttacttatgattttgttaaatcaaagaactttattttaattaaatgtaagagactttatttatgtttttgtt 21288156  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||||||||| |||||| |||||||| || ||||||||||| |||||| ||||||  ||||||||||||||||| ||||||||||||    
T  21288155 gagtcaatgatctttattgttagtgtaatgtatgaatattatgtttcgctaaagagaaaagaaaatgcatgtgaagaacctttgtttctaaa 21288064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 25874676 - 25874867
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    ||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||    
T  25874676 gctttgttttt-ttgaatatgatgagttttacttatgtttttgttaaatcaaagaactttatttttattaaatgtaagtgacattatttatgtttttatt 25874774  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatg-ttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||| |||||||||||||||||||||||| || |||||||| ||||| |||||||||||  ||||||||||||||||| ||||||||||||    
T  25874775 gagtcattgatctttgttgttattgtaatgtatgaatattatgtttttgttaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaa 25874867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 5 - 160
Target Start/End: Original strand, 3778883 - 3779038
Alignment:
Q  5 tgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagt 104  Q
    |||||||||||||||||||||| ||||||| ||||||| |||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  3778883 tgtttttgttgaatatgatgagctttacttatgctttttttaaatcaaataactttatttttattaaatataagggactttatttatgtttttgttgagt 3778982  T
Q  105 caatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaa 160  Q
    |||||||||||||| |||||||| ||| || |||||||||||||||||||||||||    
T  3778983 caatgatctttgttattattgtagtgtatgaatattatgttttgctaaaaagaaaa 3779038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 27926604 - 27926784
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||| ||||||||||| | || |||||||||||||||||||||||          || |||||||||||||||||||||| |||    
T  27926604 gctttgtttttgttgaatataatgagttttacctatgtttttgttaaatcaaagaacttta----------atgtaagagactttatttatgtttt-gtt 27926692  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  27926693 gagtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaa 27926784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 13826066 - 13825875
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||||||||  ||||||| |||||||||||||| |||||||||||||||| || ||| |||| ||| |||||||| ||||||||    
T  13826066 gctttgtttttgttgaatatgatgaactttacttatgcttttgttaaattaaagaactttatttttatttaatgtaagtgacattatttatatttttgtt 13825967  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
     ||||| |||||||||||||||||||||||| || |||||||||||| ||||||| ||||  |||||||| | |||||| ||||||||||||    
T  13825966 aagtcagtgatctttgttgttattgtaatgtatgaatattatgttttactaaaaataaaagaaaatgcatatcaagaacctttgtttctaaa 13825875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 48251717 - 48251810
Alignment:
Q  81 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtga 174  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  48251717 actttatttatgtttttgttgaatcaatgatctttgttgttattgtaatgtatggatattatgttttgctaaaaagaaaagaaaatgcatgtga 48251810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 12149138 - 12149017
Alignment:
Q  39 ttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggata 138  Q
    ||||||| |||||| ||| ||||||| | |||||| ||    ||||||||||||||||| ||||||||||||||||||||||| || |||| | | ||||    
T  12149138 ttttgtttaatcaatgaattttatttctgttaaatgtagtgaactttatttatgtttttattgagtcaatgatctttgttgttgttataatctatcgata 12149039  T
Q  139 ttatgttttgctaaaaagaaaa 160  Q
    |||||||||| |||||| ||||    
T  12149038 ttatgttttgataaaaaaaaaa 12149017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 26188005 - 26187889
Alignment:
Q  76 aagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaa 175  Q
    |||| |||||| ||||||||||||||||  |||||||||| ||||||||| ||||| || ||||||| |||||| |||||||| |  ||||||||||||     
T  26188005 aagaaactttaattatgtttttgttgaggtaatgatctttattgttattgcaatgtatgaatattatattttgcgaaaaagaatagaaaatgcatgtgat 26187906  T
Q  176 gaacatttgtttctaaa 192  Q
    |||  ||||||| ||||    
T  26187905 gaatttttgtttttaaa 26187889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 32847682 - 32847582
Alignment:
Q  2 ctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttg 101  Q
    |||||||||||| ||||||||||| ||||| || || ||||||| |||||||||||||| ||||| |||||| | |   |||||||||||||||||||||    
T  32847682 ctttgtttttgtggaatatgatgaattttatttatgtttttgttgaatcaaagaactttgtttttgttaaatgttatgaactttatttatgtttttgttg 32847583  T
Q  102 a 102  Q
    |    
T  32847582 a 32847582  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 36584476 - 36584410
Alignment:
Q  81 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgtttt 147  Q
    ||||||||||||||||| |||| ||||||||||||||||||||| |||||| || ||||||| ||||    
T  36584476 actttatttatgtttttcttgaatcaatgatctttgttgttattataatgtatgaatattatatttt 36584410  T

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Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 48251487 - 48251557
Alignment:
Q  3 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaat 73  Q
    |||||||||||||||||||||||| |||| || |||||||||||| | |||||||||||| ||| ||||||    
T  48251487 tttgtttttgttgaatatgatgagctttatttatgcttttgttaacttaaagaactttatatttattaaat 48251557  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 13084754 - 13084795
Alignment:
Q  83 tttatttatgtttttgttgagtcaatgatctttgttgttatt 124  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  13084754 tttatttatgtttttgttgagtcattgatctttgttgttatt 13084795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 37341419 - 37341498
Alignment:
Q  39 ttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgtt 118  Q
    ||||||| |||||| ||||||||||||| |||||| | | | ||||||||||||||||| |||| |||| || |||||||    
T  37341419 ttttgttgaatcaaggaactttatttttgttaaatgtgataaactttatttatgttttttttgaatcaaggaactttgtt 37341498  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 36584530 - 36584468
Alignment:
Q  2 ctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttattt 64  Q
    ||||||||||||||||||||||||  |||| || |  |||||| |||||||||||||||||||    
T  36584530 ctttgtttttgttgaatatgatgaactttatttatatttttgtcaaatcaaagaactttattt 36584468  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 32836829 - 32836738
Alignment:
Q  8 ttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgt 99  Q
    ||||||||||||||||||  |||| || ||||||| || |||||| ||||||| ||||| |||||| | |   ||| |||||||||||||||    
T  32836829 ttttgttgaatatgatgaactttatttatgctttttttcaatcaaggaactttgtttttattaaatgtcatgaactgtatttatgtttttgt 32836738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 2 - 192
Target Start/End: Original strand, 8227217 - 8227407
Alignment:
Q  2 ctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttg 101  Q
    |||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||     
T  8227217 ctttgtttatgttgaatatgatgagttttacttatgtttttgttaaatcaaagaactttatttttattaaatgtaagggactttatttatgtttttgttt 8227316  T
Q  102 agtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||  ||||||  |||||| |||||||||| ||||||||||||    
T  8227317 agtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaagtagaaaagaaaatgcgtgtgaagaacttttgtttctaaa 8227407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 13355961 - 13355770
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||||||||||| |||||||||||| |||||| || |||||||||||||||||||||||    
T  13355961 gctttgtttttgttgaataggatgagttttacttaagcttttgttaaatcaaataactttatttttattaaatgtatgagactttatttatgtttttgtt 13355862  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
     |||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||  |||||||| ||| |||| ||||||||||||    
T  13355861 aagtcaatgatctttgttgttgttctaatgtatggatattatgttttgctaaaaagaaaagaaaatgcatatgatgaacctttgtttctaaa 13355770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 9762901 - 9763090
Alignment:
Q  3 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 102  Q
    ||||||| |||||||||||||||  ||||||| || ||||||||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||||    
T  9762901 tttgtttatgttgaatatgatgaactttacttatgtttttgttaaattaaagaactttatttttattaaatgtaagggactttatttatgtttttgttga 9763000  T
Q  103 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||| ||||||||||||||||||| || |||||||||||||||||||| ||||  ||||||||||||||||| ||||||||||||    
T  9763001 gtcaatgatttttgttgttattgtaatgtatgaatattatgttttgctaaaaataaaagaaaatgcatgtgaagaacctttgtttctaaa 9763090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 7968407 - 7968596
Alignment:
Q  5 tgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagt 104  Q
    ||||||||||||||| |||||  ||||| | |||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||     
T  7968407 tgtttttgttgaataagatgaactttacctatgcttttgttaaatgaaagaactttatttttattaaatgtaagagactttatttatgtttttgtttagc 7968506  T
Q  105 caatgatctttgttgttattgtaatgtgtggatattatgttttgct--aaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||  ||||| ||||||||||| ||||||||||||    
T  7968507 caatgatctttgttgttattgtaatgtatggatattatgttttgctaaaaaaagaaaagtaaatggatgtgaagaacctttgtttctaaa 7968596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 11481573 - 11481406
Alignment:
Q  3 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 102  Q
    ||||||| |||||||||||||||| ||||||| || |||||||||||||||||||||||||||| |||||| |||| || ||||||||||||||||||||    
T  11481573 tttgtttatgttgaatatgatgagctttacttatgtttttgttaaatcaaagaactttatttttattaaatgtaagggagtttatttatgtttttgttga 11481474  T
Q  103 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcat 170  Q
    ||||||||| |||| | ||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  11481473 gtcaatgatttttgctattattgtaatgtgtgaatattatgttttgctaaaaagaaaagaaaatgcat 11481406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 42 - 192
Target Start/End: Original strand, 36582901 - 36583051
Alignment:
Q  42 tgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatatta 141  Q
    |||||||||||||||||||||||||  ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||    
T  36582901 tgttaaatcaaagaactttatttttaataaatgtaagacactttatttatgtttttgtggagtcaatgatctttgttgttattgtaatgtatgaatatta 36583000  T
Q  142 tgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||||||||||||||  ||||||||||||||||| ||| ||||||||    
T  36583001 tgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttatttctaaa 36583051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 6870603 - 6870774
Alignment:
Q  3 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 102  Q
    |||||||||||||||||||||||| |||| || |||||||||||||||||| ||| |||||||| |||||| ||||  ||||||||||| ||||||||      
T  6870603 tttgtttttgttgaatatgatgagctttatttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatatttttgtttg 6870702  T
Q  103 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtga 174  Q
    |||||||||||||||||| |||||||||| || ||||||||||| ||||| ||||||   ||||||||||||    
T  6870703 gtcaatgatctttgttgtaattgtaatgtatgaatattatgtttcgctaataagaaacgaaaatgcatgtga 6870774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 192
Target Start/End: Complemental strand, 31006164 - 31005972
Alignment:
Q  2 ctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttg 101  Q
    |||||||||||||||||||||| |  |||| || ||||||| | |||||||| ||||||||||||  ||||   |||  |||||| |||| |||||||||    
T  31006164 ctttgtttttgttgaatatgataatctttatttatgcttttatcaaatcaaataactttatttttagtaaacggaaggaactttacttatatttttgttg 31006065  T
Q  102 agtcaatgatc--tttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||||   ||| ||||||| |||||||||| ||||||||||||||||||||||| |  |||||||||| | |||| ||||||| ||||    
T  31006064 agtcaatgattatttttttgttatcgtaatgtgtgaatattatgttttgctaaaaagaatagaaaatgcatgtaatgaacttttgtttttaaa 31005972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 7987176 - 7987282
Alignment:
Q  2 ctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttg 101  Q
    |||||||||||||||||| |||||  |||||   |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||    
T  7987176 ctttgtttttgttgaataagatgaactttacccatgcttttgttaaatgaaagaactttatttttatt-aatgtaagagactttatttatgtttttgttg 7987274  T
Q  102 agtcaatg 109  Q
    || |||||    
T  7987275 agccaatg 7987282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 7987283 - 7987342
Alignment:
Q  39 ttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttg 98  Q
    ||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||    
T  7987283 ttttgttaaatgaaagaactttatttttattaaatgtaagagactttatttatgtttttg 7987342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 38951780 - 38951589
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||    ||| |||| |||||||| ||||| ||||||    
T  38951780 gctttgtttttgttgaatatgatgagctttacttatgtttttgttaaatcaaagaactttatttttagctaatgtaagggactttatatatgtgtttgtt 38951681  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||  ||||||||||||||||| ||||||||||||    
T  38951680 gagtcaatgatctttgttgttattgtaatgtatgaatattatgttttgttaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaa 38951589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 41039492 - 41039302
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||| || |||||||||||||| ||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  41039492 gctttgcttatgttgaatatgatg-gttttacttatgtttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttatgtttttgtt 41039394  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||||||||||||||||||||||||| ||  ||| ||||||||||||||||||||  |||| ||| |||||||| ||||||||||||    
T  41039393 gagtcaatgatctttgttgttattgtaatgtatgactatgatgttttgctaaaaagaaaagaaaatacatatgaagaacctttgtttctaaa 41039302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 22278472 - 22278281
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||  ||||| ||||  ||||||| || |||||||||||||||||| ||||||||| |||||| |||| |||||||||||||||||||||    
T  22278472 gctttgtttttgtcaaatattatgaactttacttatgtttttgttaaatcaaagaattttatttttattaaatgtaagggactttatttatgtttttgtt 22278373  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
     |||||||||||||||||||||  || |||  ||||||||||||||||| ||||||||||  |||||||||| |||||||||||||||||||    
T  22278372 aagtcaatgatctttgttgttaccgtgatgcatggatattatgttttgccaaaaagaaaagaaaatgcatgttaagaacatttgtttctaaa 22278281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 8819283 - 8819474
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||| ||||| |||| || | ||||||| |||||||| ||||||| |||| |||||| ||||  ||||||||||||||||||||    
T  8819283 gctttgtttttgttgaatattatgagctttatttatacttttgtcaaatcaaataactttacttttattaaatgtaaggaactttatttatgtttttgtt 8819382  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    || ||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||  |||||||||||| |||| || |||| ||||    
T  8819383 gaatcaatgatctttgttgttattataatgtatagatattatgttttgctaaaaagaaaagaaaatgcatgtgatgaactttggtttttaaa 8819474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 40714823 - 40715014
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||||||||| |||| |  || |||||||||||||||||||||||||||| |||||  ||||  || |||||||||||||||||    
T  40714823 gctttgtttttgttgaatatgatgagctttattaatgtttttgttaaatcaaagaactttatttttattaaaagtaaggaacattatttatgtttttgtt 40714922  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||||||||||||  |||||||||||| | |||||||| |||||||||||| ||||  |||||||||||| |||| ||||||| ||||    
T  40714923 gagtcaatgatctttgtctttattgtaatgtattgatattatattttgctaaaaacaaaagaaaatgcatgtgatgaacttttgtttttaaa 40715014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 42555471 - 42555280
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    ||||||||||||||||||||||| |  |||| || |||||||||||||| |||||||||||||||| |||||| ||||   |||||||||||||||||||    
T  42555471 gctttgtttttgttgaatatgataacctttatttatgcttttgttaaattaaagaactttatttttattaaatgtaaggatctttatttatgtttttgtt 42555372  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||||| |||||||||||||||||||| || |||||||| ||| ||||||||||||  |||||||||| | |||| ||||||| ||||    
T  42555371 gagtcaatgaactttgttgttattgtaatgtatgtatattatgcttttctaaaaagaaaagaaaatgcatgttatgaacttttgtttttaaa 42555280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 51357327 - 51357137
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||||||||| |||| || | ||||||| | |||||| |||||||||||| |||||| ||||  |||| |||||||||| ||||    
T  51357327 gctttgtttttgttgaatatgatgagctttatttatacttttgtcatatcaaataactttatttttattaaatgtaaggaactt-atttatgtttctgtt 51357229  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||| |||| || |||| ||||    
T  51357228 gagtcaataatctttgttgttattgtaatgtatggatattatgttttgctaaaaagaaaagaaaatgcatgtgatgaactttggtttttaaa 51357137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 23626996 - 23626815
Alignment:
Q  3 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 102  Q
    |||||||||||| ||||||||||| ||||  | ||||||||||||||||||||||||||| |||    ||| ||||  || |||||||||||||||||||    
T  23626996 tttgtttttgttaaatatgatgagctttatatatgcttttgttaaatcaaagaactttatatttg---aatgtaaggaaccttatttatgtttttgttga 23626900  T
Q  103 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgttt 187  Q
    ||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||||||  |||||||||||| |||| |||||||    
T  23626899 gtcaatgatctttgttgttattgtaatatatggatattatgtttttctaaacagaaaagaaaatgcatgtgatgaacttttgttt 23626815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 29117157 - 29116989
Alignment:
Q  24 gagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttat 123  Q
    |||||| ||||  ||||||||||||| ||| |||||||||||| |||||| | | |||||||||||||||||||||| | ||||||||||||||| ||||    
T  29117157 gagtttcacttaagcttttgttaaataaaaaaactttatttttattaaatgtcaaagactttatttatgtttttgttaaatcaatgatctttgttattat 29117058  T
Q  124 tgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||| || ||||||||||||||||| |||||||  |||||||||||| |||| ||||||||||||    
T  29117057 tgtaatgtatgaatattatgttttgctaagaagaaaataaaatgcatgtgatgaacctttgtttctaaa 29116989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 43624570 - 43624395
Alignment:
Q  5 tgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatg--tttttgttga 102  Q
    ||||||| ||||||||| | || ||||| | ||||||||||||||||||||||||||||||| |||||| |||| | ||||||| |||  ||||| || |    
T  43624570 tgtttttattgaatatggtaagctttacatatgcttttgttaaatcaaagaactttatttttattaaatgtaaggggctttattaatggtttttttttta 43624471  T
Q  103 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaa 178  Q
    ||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||  ||||||||||||||||    
T  43624470 gtcaatgatctttgttgttattgtaatatatggaaattatgttttgctaaaaagaaaagaaaatgcatgtgaagaa 43624395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 19841888 - 19841709
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    ||||| ||||| |||||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||| |||            || ||||||||    
T  19841888 gctttatttttcttgaatatgatgaactttacttatgcttttgttaaatcaaagaactttatttttattaaatgtaa------------atatttttgtt 19841801  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||  |||||||||||  ||| ||||||||||||| ||||||| ||||    
T  19841800 gagtcaatgatctttgttgttattgtaatgtacggatattatgttttcttaaaaagaaaagaaaacgcatgtgaagaacctttgtttttaaa 19841709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 17120334 - 17120445
Alignment:
Q  81 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaaca 180  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||  |||||||||||| ||||     
T  17120334 actttatttaggtttttgttgagtcaatgatcattgttgttattgtaatgtatggatattatgttttgttaaaaagaaaagaaaatgcatgtgatgaact 17120433  T
Q  181 tttgtttctaaa 192  Q
    ||||||| ||||    
T  17120434 tttgtttttaaa 17120445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 36464802 - 36464986
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||||||||| |||  || | ||||||| |||||||| |||||||||||| |||||| |||| ||  |||||||||||||| ||    
T  36464802 gctttgtttttgttgaatatgatgagctttgtttatacttttgtcaaatcaaataactttatttttattaaatgtaag-gaacttatttatgtttttatt 36464900  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||| ||||      |||||||||||| || |||| ||||||||||||||||||||  |||||||||||| |||| || |||| ||||    
T  36464901 gagtcaataatct------ttattgtaatgtatgaatatcatgttttgctaaaaagaaaagaaaatgcatgtgatgaactttggtttttaaa 36464986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 17120280 - 17120342
Alignment:
Q  2 ctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttattt 64  Q
    ||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||    
T  17120280 ctttgtttttgttgaatatgatgagctttatttatgcttttgttaaatcaaagaactttattt 17120342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 40571958 - 40572026
Alignment:
Q  81 actttatttatgtttttg-ttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttg 148  Q
    |||||||||||||||||  ||||||||| ||||||||||||| || |||| | | ||||||||||||||    
T  40571958 actttatttatgttttttattgagtcaaggatctttgttgttgttataatctatcgatattatgttttg 40572026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 3 - 187
Target Start/End: Original strand, 23809649 - 23809833
Alignment:
Q  3 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 102  Q
    ||||||| |||||||||||||||  ||||||| || |||||||||||||||||| ||||||||| |||||| |||| |||||| ||||||||||||||||    
T  23809649 tttgtttatgttgaatatgatgaactttacttatgtttttgttaaatcaaagaattttatttttattaaatgtaagggactttttttatgtttttgttga 23809748  T
Q  103 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgttt 187  Q
    ||||||||||||||||||||||||||||| || | || ||||||||||||||||||||  ||||||||||||||||| |||||||    
T  23809749 gtcaatgatctttgttgttattgtaatgtatgaacatgatgttttgctaaaaagaaaagtaaatgcatgtgaagaacctttgttt 23809833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 192
Target Start/End: Complemental strand, 5973118 - 5972929
Alignment:
Q  2 ctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttg 101  Q
    |||||||| |||||||||||||||| ||||||| || ||||||||||||||| |||||||||||| |||||| ||||||||||||||||||| ||| |||    
T  5973118 ctttgtttatgttgaatatgatgagctttacttatgtttttgttaaatcaaataactttatttttattaaatgtaagagactttatttatgtattttttg 5973019  T
Q  102 agtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||||||||| ||||||||||||||| || ||||||||||||||||||| |||||  |||||| ||||||||||  |||||||||||    
T  5973018 agtcaatgatcttttttgttattgtaatgtatgaatattatgttttgctaaaatgaaaagaaaatgcctgtgaagaac-cttgtttctaaa 5972929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 2944053 - 2944233
Alignment:
Q  7 tttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtca 106  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| |||||| ||||| || |||||| ||||||||| ||||||    
T  2944053 tttttgttgaatatgatgagttttatttatgcttttgttaaatcaaagaactttatatttattaaatgtaagaaacattatttttgtttttgtcgagtca 2944152  T
Q  107 atgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgttt 187  Q
    ||||||||||||||||||||||||  |||||| ||| |||||||||||||||||  |||||||||||| |||| |||||||    
T  2944153 atgatctttgttgttattgtaatgcatggatactatattttgctaaaaagaaaagaaaatgcatgtgatgaacttttgttt 2944233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 2 - 192
Target Start/End: Original strand, 11039159 - 11039350
Alignment:
Q  2 ctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttg 101  Q
    |||||||||| |||||||||||||  ||||||| | ||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||     
T  11039159 ctttgtttttattgaatatgatgaactttacttatacttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttgtgtttttgttt 11039258  T
Q  102 agtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaa-caaatgcatgtgaagaacatttgtttctaaa 192  Q
     || |||||||||| ||||||||||||| | || ||||||||||||||||||||||||||  ||||||||||||||||| ||| ||||||||    
T  11039259 cgttaatgatctttattgttattgtaatctatgaatattatgttttgctaaaaagaaaaagaaaatgcatgtgaagaacctttatttctaaa 11039350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 36298933 - 36298760
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||||||||| |||| || | ||||||| ||||||||||||||||||| | ||||||||||   ||||||||||||||||||||    
T  36298933 gctttgtttttgttgaatatgatgagctttatttatacttttgtcaaatcaaagaactttatttgtattaaatataaagtactttatttatgtttttgtt 36298834  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtga 174  Q
    ||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||  ||||||| ||||    
T  36298833 gagtcaatgatctttgttgttattgtaatatatggatattatggtttgctaaaaagaaaataaaatgcacgtga 36298760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 28636524 - 28636373
Alignment:
Q  2 ctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttg 101  Q
    |||||||| |||||||||||||||  ||||||| || ||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  28636524 ctttgtttatgttgaatatgatgaactttacttatgtttttgttaaatcaaataactttatttttattaaatgtaagagactttatttatgtttttgttg 28636425  T
Q  102 agtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaa 153  Q
    ||||||||||||||||| |||||||||||| || ||||||||||||||||||    
T  28636424 agtcaatgatctttgtttttattgtaatgtatgaatattatgttttgctaaa 28636373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 30541465 - 30541649
Alignment:
Q  8 ttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaa 107  Q
    ||||||||||||||||||| |||||||  ||||||| || ||||||||||||||||||| |||||| ||| |||||| |||||||||||| || ||||||    
T  30541465 ttttgttgaatatgatgagctttacttaagcttttgatatatcaaagaactttatttttattaaatgtaatagacttgatttatgtttttcttaagtcaa 30541564  T
Q  108 tgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||||||||||||||||||| || |||||||||||||||||||| ||||  |||||||||||| |||| | | ||||||||    
T  30541565 tgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaataaaagaaaatgcatgtgatgaacctatttttctaaa 30541649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 7767218 - 7767031
Alignment:
Q  5 tgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagt 104  Q
    ||||||| |||||||||||||| |||||   | ||||||||||||||||||||||||| ||| |||||| ||| ||| ||||| ||||||||||||||||    
T  7767218 tgtttttcttgaatatgatgagctttaccaatacttttgttaaatcaaagaactttatgtttattaaatgtaaaagattttatgtatgtttttgttgagt 7767119  T
Q  105 caatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||| ||||||||||||||||| | || |||| ||||||||||||||||||||  |||||||||| |||||| ||||||||||||    
T  7767118 caatgatttttgttgttattgtaatctatgaatataatgttttgctaaaaagaaaagaaaatgcatgtaaagaacctttgtttctaaa 7767031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 192
Target Start/End: Complemental strand, 25502288 - 25502108
Alignment:
Q  2 ctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttg 101  Q
    ||||||||||||||||||||||||  ||||||| || ||||||||||||||||| |||||          || |||||||||||||||||||||||||||    
T  25502288 ctttgtttttgttgaatatgatgaactttacttatgtttttgttaaatcaaagagcttta----------atgtaagagactttatttatgtttttgttg 25502199  T
Q  102 agtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||||||||||||||| |||||||| || ||||||| |||||||||||||||||  |||||||| |||||||| ||||||||||||    
T  25502198 agtcaatgatctttgttgttaatgtaatgtatgaatattatattttgctaaaaagaaaataaaatgcatctgaagaacctttgtttctaaa 25502108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 31457420 - 31457228
Alignment:
Q  3 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaacttt--atttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||||||||||||||||||||||  |||| || | |||||||||||||||||||||||  |||||| |||||||||||  ||||||||||||||||||||    
T  31457420 tttgtttttgttgaatatgatgaactttatttatacttttgttaaatcaaagaactttttatttttattaaatataaggaactttatttatgtttttgtt 31457321  T
Q  101 gagtcaatgatctt------tgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgttt 187  Q
    ||||||||||||||      ||||||||||||||||  || |||||||||||||||||||||||||  |||||||||||| |||| |||||||    
T  31457320 gagtcaatgatctttgtttttgttgttattgtaatgcatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgatgaacttttgttt 31457228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 38440431 - 38440604
Alignment:
Q  19 atgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgtt 118  Q
    |||||||  ||||||| || |||| |||||||||||||| |||||||| ||||||  |||  ||||||||||||||||||||||||||||||||||||||    
T  38440431 atgatgaactttacttatgttttttttaaatcaaagaacattatttttattaaatgcaaggaactttatttatgtttttgttgagtcaatgatctttgtt 38440530  T
Q  119 gttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    ||||||||||||| || |||||||||||| ||||||||||||  |||| |||||||||||  ||||||||||||    
T  38440531 gttattgtaatgtatgaatattatgttttactaaaaagaaaagaaaatccatgtgaagaatctttgtttctaaa 38440604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 33189542 - 33189362
Alignment:
Q  5 tgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagt 104  Q
    |||||||||||||||| ||||| ||||  | ||| ||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||    
T  33189542 tgtttttgttgaatat-atgagctttagctatgcctttgttaaatcaaagaactttatttttattaaatgtaag-gactttatttatgtttttgttgagt 33189445  T
Q  105 caatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttct 189  Q
    ||||||||||| ||||||||||||||| | ||||||||||||| ||||||||||||  |||  |||||||||||| |||||||||    
T  33189444 caatgatcttt-ttgttattgtaatgtat-gatattatgtttttctaaaaagaaaagaaaacacatgtgaagaacctttgtttct 33189362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 22519172 - 22519329
Alignment:
Q  2 ctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttg 101  Q
    |||||||||||||||||||||| |  |||| || |||||||||||||||||||||||||| |||| |||||| |||   |||||||||||| ||| ||||    
T  22519172 ctttgtttttgttgaatatgataaactttatttatgcttttgttaaatcaaagaactttacttttattaaatgtaatgaactttatttatg-tttcgttg 22519270  T
Q  102 agtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaa 160  Q
    ||||||||| |||||||||| ||||||||| | ||||||||||||| ||||||||||||    
T  22519271 agtcaatgaactttgttgtttttgtaatgtatagatattatgtttttctaaaaagaaaa 22519329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 15954686 - 15954797
Alignment:
Q  81 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaaca 180  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||| ||  ||||||||||||||||||||||||  |||||||||||| ||||     
T  15954686 actttatttatgtttttggtgagtcaatgatctttgttgttattgtcatgtatgtctattatgttttgctaaaaagaaaagaaaatgcatgtgatgaact 15954785  T
Q  181 tttgtttctaaa 192  Q
    ||||||| ||||    
T  15954786 tttgtttttaaa 15954797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 160
Target Start/End: Original strand, 1053127 - 1053249
Alignment:
Q  38 cttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggat 137  Q
    ||||||| |||| |||||||||||||||| ||||||  |||  | |||||||||||||||||||||| |||||||||||||||||| ||||||| || ||    
T  1053127 cttttgtcaaatgaaagaactttatttttattaaatgcaaggaattttatttatgtttttgttgagttaatgatctttgttgttatcgtaatgtatgaat 1053226  T
Q  138 attatgttttgctaaaaagaaaa 160  Q
    |||||||||||||||||| ||||    
T  1053227 attatgttttgctaaaaataaaa 1053249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 40910567 - 40910655
Alignment:
Q  104 tcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||||||||||||||||||||||| || |||||| ||||||||||||||||||  |||||||||||| |||| ||||||| ||||    
T  40910567 tcaatgatctttgttgttattgtaatgtatgaatattacgttttgctaaaaagaaaagaaaatgcatgtgatgaacttttgtttttaaa 40910655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 192
Target Start/End: Complemental strand, 47925054 - 47924937
Alignment:
Q  82 ctttatttatgtttttgttgagtcaatgatctttgttgtta---ttgtaatgtgtggatattatgttttgctaaaaagaaaaa----caaatgcatgtga 174  Q
    |||||||||||||||||||||||||| ||||||| ||||||   ||||||||| || |||||||||||||||||||| |||||     ||||||||||||    
T  47925054 ctttatttatgtttttgttgagtcaaggatctttattgttattgttgtaatgtatgtatattatgttttgctaaaaaaaaaaaaaggaaaatgcatgtga 47924955  T
Q  175 agaacatttgtttctaaa 192  Q
     |||| ||||||| ||||    
T  47924954 tgaacttttgtttttaaa 47924937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 27337046 - 27336930
Alignment:
Q  39 ttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggata 138  Q
    ||||||| |||||||||| ||||||| | |||||| ||    ||||||| ||||||||| ||||||||| ||||||||||||| || |||| | | ||||    
T  27337046 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatctatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 27336947  T
Q  139 ttatgttttgctaaaaa 155  Q
    |||||||||||||||||    
T  27336946 ttatgttttgctaaaaa 27336930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 31759041 - 31758962
Alignment:
Q  82 ctttatttatgtttttgt-tgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaa 160  Q
    |||||| ||| ||||||| ||||||||| ||||||||| |||||||||||| |  ||||||||||||| |||||||||||    
T  31759041 ctttatctatatttttgtctgagtcaataatctttgttcttattgtaatgtatatatattatgttttgttaaaaagaaaa 31758962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 15954066 - 15954130
Alignment:
Q  7 tttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaa 71  Q
    ||||||||| ||||||| || |||| || ||||||||||||||||| ||||||||||||| ||||    
T  15954066 tttttgttggatatgatcagctttatttatgcttttgttaaatcaatgaactttatttttattaa 15954130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 14753978 - 14754083
Alignment:
Q  2 ctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttg 101  Q
    ||||||||||||| ||||||||||  |||| || || || ||||||||||| ||||||  ||||| |||||| | |   || ||||| |||||||||||     
T  14753978 ctttgtttttgttaaatatgatgaactttatttatgtttgtgttaaatcaaggaacttagtttttgttaaatgtgatgaacattattcatgtttttgttt 14754077  T
Q  102 agtcaa 107  Q
    ||||||    
T  14754078 agtcaa 14754083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 6860 - 7047
Alignment:
Q  1 gctttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 100  Q
    |||| |||| |||||||||||||||  ||||||| || |||||||||||||||||| ||||||||| ||| || |||  ||| | |||||||||||||||    
T  6860 gcttcgtttatgttgaatatgatgaactttacttatgtttttgttaaatcaaagaattttatttttattatatgtaatggacctcatttatgtttttgtt 6959  T
Q  101 gagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttc 188  Q
    ||||||||||||||||||||||||||||  | || |||||||||||||||||||||||||  ||||||||||||||||| ||||||||    
T  6960 gagtcaatgatctttgttgttattgtaaaatatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttgtttc 7047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 104 - 192
Target Start/End: Complemental strand, 62527 - 62439
Alignment:
Q  104 tcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 192  Q
    |||||||||||||||||||||||||||| || |||||| ||||||||||||||||||  |||||||||||| |||| ||||||| ||||    
T  62527 tcaatgatctttgttgttattgtaatgtatgaatattacgttttgctaaaaagaaaagaaaatgcatgtgatgaacttttgtttttaaa 62439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 22168 - 22052
Alignment:
Q  39 ttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggata 138  Q
    ||||||| |||||||||| ||||||| | |||||| ||    ||||||||||||||||| ||||||||| ||||||||||||| || |||| | | ||||    
T  22168 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatttatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 22069  T
Q  139 ttatgttttgctaaaaa 155  Q
    |||||||||||||||||    
T  22068 ttatgttttgctaaaaa 22052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 66619 - 66580
Alignment:
Q  81 actttatttatgtttttgttgagtcaatgatctttgttgt 120  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  66619 actttatttatgtttttgttgagtcaatgatctttgttgt 66580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 66672 - 66611
Alignment:
Q  3 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttattt 64  Q
    |||||||||| ||||||||||||| |||| || | ||||||| |||||||||||||||||||    
T  66672 tttgtttttggtgaatatgatgagctttatttatacttttgtcaaatcaaagaactttattt 66611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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