View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12535_low_24 (Length: 217)
Name: NF12535_low_24
Description: NF12535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12535_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 42413608 - 42413424
Alignment:
| Q |
18 |
cacctattaaattctcattctcctcacctctttattcccttttaaccataacaatgactctatcacaaatccactcattaactcatggaaatgacattca |
117 |
Q |
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| T |
42413608 |
cacctactaaattctcattcttctcgcctctttattcccttttaaccataacaatgactctatcacaaatccactcattaactcatgaaaatgacattca |
42413509 |
T |
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| Q |
118 |
ctcccttcaagaaatagtgcatggcattgatcctaattcaatttctccatcttcttatatcaatagttgggacttcacagttgat |
202 |
Q |
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| T |
42413508 |
ctcccttcaagaaatagtgcatggcattgatcctaattcaatttctccatcttcttatatcaatagttgggacttcacagttgat |
42413424 |
T |
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