View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12535_low_25 (Length: 205)

Name: NF12535_low_25
Description: NF12535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12535_low_25
NF12535_low_25
[»] chr8 (9 HSPs)
chr8 (14-188)||(36184778-36184952)
chr8 (14-188)||(36207962-36208136)
chr8 (14-188)||(36202490-36202664)
chr8 (14-166)||(36199083-36199235)
chr8 (14-166)||(36201105-36201257)
chr8 (18-175)||(36196941-36197098)
chr8 (14-166)||(36213391-36213543)
chr8 (14-150)||(36210049-36210185)
chr8 (14-140)||(36188616-36188742)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 36184778 - 36184952
Alignment:
Q  14 caaaggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36184778 caaaggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaag 36184877  T
Q  114 agctctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatctt 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36184878 agctctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatctt 36184952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 36207962 - 36208136
Alignment:
Q  14 caaaggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| |||||||||||    
T  36207962 caaaggggataccaatctcacctaaatcaagtctaccatgaagatcatacagtacaactagtactgtttgcagtttctttatcttagcacacagaagaag 36208061  T
Q  114 agctctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatctt 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36208062 agctctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatctt 36208136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 36202490 - 36202664
Alignment:
Q  14 caaaggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaag 113  Q
    ||||||| |||||||| |||| |||||||||||||||||| |||||| ||| ||||||||| ||||||||||| ||||| |||||||| ||||| |||||    
T  36202490 caaagggcataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggactgtttgcagctccttcatcttagcacacagtagaag 36202589  T
Q  114 agctctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatctt 188  Q
    |||||||||||||||| | ||||||||||||||||| ||| ||| |||||| |||| ||||| |||||| |||||    
T  36202590 agctctttctgcagttcttattcttttgttattaccgtaagacatgcaacaggatgattcagctagatcaatctt 36202664  T

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Target: chr8; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 14 - 166
Target Start/End: Original strand, 36199083 - 36199235
Alignment:
Q  14 caaaggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaag 113  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||| ||| ||||||||| ||||||||||| || || |||||||| |||||||||||    
T  36199083 caaaggggataccaatcttacttaaatcaagtctaccataaagatcatacactacaactaggactgtttgcagctctttcatcttagcacacagaagaag 36199182  T
Q  114 agctctttctgcagttgtcattcttttgttattaccataacacacgcaacaag 166  Q
    ||||||||||| |||||||| |||||| |||||| || |||||| ||||||||    
T  36199183 agctctttctgtagttgtcaatcttttattattaacaaaacacatgcaacaag 36199235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 166
Target Start/End: Original strand, 36201105 - 36201257
Alignment:
Q  14 caaaggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaag 113  Q
    ||||||||| ||||||||| |||||||||| |||||||||||||||| ||| ||||||||| ||||||||||| ||||| |||||||| || | |||| |    
T  36201105 caaaggggacaccaatctcccctaaatcaaatctaccatgaagatcatacagtacaactaggactgtttgcagctccttcatcttagcacaaataagatg 36201204  T
Q  114 agctctttctgcagttgtcattcttttgttattaccataacacacgcaacaag 166  Q
    |||||| ||||||||||||||||||||  |||||||| |||||| ||||||||    
T  36201205 agctctatctgcagttgtcattcttttactattaccaaaacacatgcaacaag 36201257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 36196941 - 36197098
Alignment:
Q  18 ggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaagagct 117  Q
    |||||||||||||||||||||||| ||||| ||| |||||||| ||| ||||||||| ||||||||||| || || |||||||| |||| |||| |||||    
T  36196941 ggggataccaatctcacctaaatcgagtctcccacgaagatcatacagtacaactaggactgtttgcagctctttcatcttagcacacaaaagatgagct 36197040  T
Q  118 ctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcag 175  Q
    ||||||||||||| |||||||||  |||||||| || ||| |||||||| || |||||    
T  36197041 ctttctgcagttgccattctttttctattaccaaaaaacatgcaacaagttgattcag 36197098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 166
Target Start/End: Original strand, 36213391 - 36213543
Alignment:
Q  14 caaaggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaag 113  Q
    ||||||||| |||||||||||||||||| ||||| |||||||||||| ||| |||||  || ||||||||||| || || |||||||| || | |||| |    
T  36213391 caaaggggacaccaatctcacctaaatcgagtctcccatgaagatcatacattacaatcaggactgtttgcagctctttcatcttagcacaaataagatg 36213490  T
Q  114 agctctttctgcagttgtcattcttttgttattaccataacacacgcaacaag 166  Q
    |||||||||||||||||||| | ||||  |||||||| |||||| ||||||||    
T  36213491 agctctttctgcagttgtcactgttttactattaccaaaacacatgcaacaag 36213543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 150
Target Start/End: Original strand, 36210049 - 36210185
Alignment:
Q  14 caaaggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaag 113  Q
    ||||||||||||||||||| |||||||  |||| ||||||||||||| ||| |||||  || ||||||||||| || || |||||||| || ||||||      
T  36210049 caaaggggataccaatctctcctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgcagctctttcatcttagcacaaagaagatc 36210148  T
Q  114 agctctttctgcagttgtcattcttttgttattacca 150  Q
    |||||||||||||||| ||||||||||  ||||||||    
T  36210149 agctctttctgcagttatcattcttttactattacca 36210185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 36188616 - 36188742
Alignment:
Q  14 caaaggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaag 113  Q
    ||||||||||||||||||| |||||||  |||| ||||||||||||| ||| |||||  || ||||||||||| || || |||||||| || ||||||      
T  36188616 caaaggggataccaatctctcctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgcagctctttcatcttagcacaaagaagatc 36188715  T
Q  114 agctctttctgcagttgtcattctttt 140  Q
    |||||||||||||||| ||||||||||    
T  36188716 agctctttctgcagttatcattctttt 36188742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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