View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12536_high_3 (Length: 574)
Name: NF12536_high_3
Description: NF12536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12536_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 34933224 - 34933655
Alignment:
| Q |
1 |
ataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagcctgagcctctctatttatgaattaacatgtgccatttacacgagagaat |
100 |
Q |
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| T |
34933224 |
ataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagcctgagcctctctatttatgaatgaacatgtgccctttacacgagagaat |
34933323 |
T |
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| Q |
101 |
attcaaacctctcctgttcttttttgtaagtgtttttcattgttttcatgccttcattacttgaaatcattccatgagagaacaacagaaagagacatat |
200 |
Q |
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| T |
34933324 |
attcaaacctctcctgttcttttttgtaagtgtttttcattgttttcaagccttcattacttgaaatcattccatgagagaacaacagaaagagacatat |
34933423 |
T |
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| Q |
201 |
atgataatcaacttgagttttgacaaaataaagaagaagaatgaaaatacatagataccttgcgaatgaagcaacgattatgaaaatatgattgaaagag |
300 |
Q |
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| T |
34933424 |
atgataatcaacttgagttttgacaaaataaagaagaagaatgaaaatacatagataccttgcgagtgaagcaacgattatgaaaatatgattgaaagag |
34933523 |
T |
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| Q |
301 |
atacaaacgaaaactgtcatgcaatgcaaccctagagagacaaattcaacaaattcttctcattctacttataagaagcttcaacccaagagattacgaa |
400 |
Q |
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| T |
34933524 |
atacaaacgaaaactgtcatgcaatgcaaccctagagag---------acaaattcttctcattctacttataagaagcttcaaccctagagattacgaa |
34933614 |
T |
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| Q |
401 |
cgaaaactgtcatgcaatgaaaatacatagataccttggag |
441 |
Q |
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| T |
34933615 |
cgaaaactatcatgcaatgaaaatacatagatacgttggag |
34933655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 249 - 437
Target Start/End: Original strand, 34926958 - 34927146
Alignment:
| Q |
249 |
acatagataccttgcgaatgaagcaacgattatgaaaatatgattgaaagagatacaaacgaaaactgtcatgcaatgcaaccctagagagacaaattca |
348 |
Q |
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| T |
34926958 |
acatagataccttgagagtgaagcaacgaatatgaaaataagattgaaagagataagaacgaaaactgtcatgcaatgcaaccctagagagacaagttca |
34927057 |
T |
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| Q |
349 |
acaaattcttctcattctacttataagaagcttcaacccaagagattacgaacgaaaactgtcatgcaatgaaaatacatagatacctt |
437 |
Q |
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| T |
34927058 |
acaaattcttctcattctacgtataagaagcttcaaccctagagattacgaaaaaaaactgtcatgcaatgaaattacatagatacctt |
34927146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34926765 - 34926816
Alignment:
| Q |
1 |
ataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagcc |
52 |
Q |
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| T |
34926765 |
ataaccgaaagagttagttatttgggctgaatgatatttccaaacccaagcc |
34926816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 34926842 - 34926885
Alignment:
| Q |
109 |
ctctcctgttcttttttgtaagtgtttttcattgttttcatgcct |
153 |
Q |
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| T |
34926842 |
ctctcctgttctttt-tgtaagtgtttttcattgttttcatgcct |
34926885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 538
Target Start/End: Original strand, 34933727 - 34933761
Alignment:
| Q |
504 |
acatcacagagaagctgcaatgaaaacttcttctt |
538 |
Q |
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| T |
34933727 |
acatcacagagaagctgcaatgaaaacttcttctt |
34933761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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