View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12536_high_8 (Length: 393)
Name: NF12536_high_8
Description: NF12536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12536_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 22 - 377
Target Start/End: Original strand, 36729751 - 36730104
Alignment:
| Q |
22 |
aatgttgggattcattctgaatttaaaatagatacacacaacacatcttaaaatattataagaatgaatccaaaatcgagttgcagtgattgaattcatt |
121 |
Q |
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| T |
36729751 |
aatgttgggattcattctgaatctaaaatagatacacacaacacatcttaaaatattataagaatgaatctaaaatcgagttgcagtgattgaattcatt |
36729850 |
T |
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| Q |
122 |
tttgattgaaatcgagatgcaactagattatatcaagtacaagcaacatatcttaattagatactaataacctgtttcattcttccccgaaaaagtccat |
221 |
Q |
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| T |
36729851 |
tttaattgaaatcgagatgcaattagattatatcaagtacaagcaacgtatcttaa---gatactaataacctgtttcattcttccctgaaaaagtccat |
36729947 |
T |
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| Q |
222 |
atgatatgttcccc-aaaaactccataagatattataacataattgaaatactcaataacaatgcaccatgcagtttgtttctttcttttgttcgaccat |
320 |
Q |
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| T |
36729948 |
atgatatgttcccccaaaaactccataagatattataacataattgaaatactcaataacaatgcaccatgcagtttgtttctttcttttgttcgaccat |
36730047 |
T |
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| Q |
321 |
ggttggttgatcatcctggtaggaggttagatgctttttaggtgttgttttagtttt |
377 |
Q |
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| T |
36730048 |
ggttggctgatcatcctgataggaggttagatgctttttaggtgttgttttagtttt |
36730104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 36720928 - 36721086
Alignment:
| Q |
19 |
atcaatgttgggattcat-tctgaatttaaaatagatacacacaacacatcttaaaatattataagaatgaatccaaaatcgagttgcagtgattgaatt |
117 |
Q |
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| T |
36720928 |
atcagtgttgagattcatctctgaatccaaaatagatacacacaacacatcttaga-tattataagaatgaatccaaaattgagatgcagtgattgattt |
36721026 |
T |
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| Q |
118 |
catttttgattgaaatcgagatgcaactagattatatcaagtacaagcaacatatcttaa |
177 |
Q |
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| T |
36721027 |
cattttttattaaaatcgagatgcaactagattatatcaagtacaagcaacgtatcttaa |
36721086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 288
Target Start/End: Original strand, 36721125 - 36721171
Alignment:
| Q |
242 |
tccataagatattataacataattgaaatactcaataacaatgcacc |
288 |
Q |
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| T |
36721125 |
tccataagatattataacataattgcaatactcaataacaatgcacc |
36721171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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