View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12536_low_2 (Length: 652)

Name: NF12536_low_2
Description: NF12536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12536_low_2
NF12536_low_2
[»] chr2 (20 HSPs)
chr2 (424-622)||(4445869-4446067)
chr2 (179-352)||(4446139-4446311)
chr2 (548-630)||(944802-944884)
chr2 (21-75)||(4446370-4446424)
chr2 (533-622)||(38935368-38935457)
chr2 (547-621)||(43398844-43398918)
chr2 (560-621)||(24037590-24037651)
chr2 (533-622)||(10459282-10459371)
chr2 (565-622)||(16564424-16564481)
chr2 (534-627)||(35311185-35311277)
chr2 (547-631)||(16180431-16180515)
chr2 (567-629)||(41099028-41099090)
chr2 (533-610)||(7932759-7932836)
chr2 (534-610)||(43465466-43465542)
chr2 (555-622)||(2949080-2949147)
chr2 (566-635)||(4224969-4225038)
chr2 (534-627)||(41374529-41374622)
chr2 (565-622)||(43042214-43042271)
chr2 (533-633)||(11386325-11386425)
chr2 (569-621)||(36597137-36597189)
[»] chr6 (9 HSPs)
chr6 (533-622)||(31323830-31323919)
chr6 (547-624)||(31522611-31522688)
chr6 (534-606)||(9829908-9829980)
chr6 (568-630)||(9675759-9675821)
chr6 (560-622)||(30531221-30531283)
chr6 (534-615)||(2282415-2282496)
chr6 (560-631)||(14222836-14222907)
chr6 (547-622)||(14446726-14446801)
chr6 (534-623)||(33822305-33822394)
[»] chr4 (8 HSPs)
chr4 (533-626)||(54235223-54235316)
chr4 (555-621)||(5496857-5496923)
chr4 (566-622)||(4423198-4423254)
chr4 (543-622)||(12276846-12276925)
chr4 (533-622)||(30848595-30848686)
chr4 (548-622)||(18995138-18995210)
chr4 (548-621)||(5024679-5024752)
chr4 (533-630)||(24980622-24980719)
[»] chr3 (8 HSPs)
chr3 (533-622)||(32221475-32221564)
chr3 (548-630)||(47783109-47783191)
chr3 (555-630)||(18364206-18364280)
chr3 (555-621)||(26104256-26104322)
chr3 (560-621)||(29637439-29637500)
chr3 (534-622)||(31280172-31280260)
chr3 (565-621)||(37330975-37331031)
chr3 (533-630)||(32221486-32221583)
[»] scaffold0097 (1 HSPs)
scaffold0097 (534-621)||(37928-38015)
[»] chr7 (5 HSPs)
chr7 (547-622)||(44816497-44816572)
chr7 (560-621)||(23971191-23971252)
chr7 (555-623)||(32652410-32652478)
chr7 (548-622)||(18731995-18732069)
chr7 (560-630)||(1554833-1554902)
[»] chr5 (11 HSPs)
chr5 (560-633)||(968276-968349)
chr5 (555-621)||(9530951-9531017)
chr5 (566-621)||(14646368-14646423)
chr5 (569-623)||(5727767-5727821)
chr5 (548-622)||(33669932-33670006)
chr5 (533-622)||(39030579-39030668)
chr5 (542-625)||(30293401-30293484)
chr5 (548-621)||(2424444-2424517)
chr5 (548-633)||(25467100-25467185)
chr5 (533-622)||(34252733-34252822)
chr5 (534-602)||(42324905-42324973)
[»] scaffold0067 (1 HSPs)
scaffold0067 (534-622)||(35957-36045)
[»] chr8 (4 HSPs)
chr8 (565-629)||(29797938-29798002)
chr8 (533-602)||(13209980-13210049)
chr8 (533-621)||(29110965-29111053)
chr8 (566-621)||(37627916-37627971)
[»] chr1 (7 HSPs)
chr1 (534-629)||(30693352-30693447)
chr1 (555-622)||(31784773-31784840)
chr1 (555-620)||(5693581-5693646)
chr1 (560-631)||(26265775-26265846)
chr1 (547-622)||(37918919-37918994)
chr1 (566-622)||(3693992-3694048)
chr1 (555-599)||(27527733-27527777)
[»] scaffold0027 (1 HSPs)
scaffold0027 (533-621)||(13190-13278)
[»] scaffold0034 (1 HSPs)
scaffold0034 (555-621)||(94984-95050)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 3e-96; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 424 - 622
Target Start/End: Complemental strand, 4446067 - 4445869
Alignment:
Q  424 gtacacacattaacactcgccttacaactttctaaggaaaaaatgtgttacgtttgagaggtcataaccgatgtgaagaaaaagagatcaaatatgtatt 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4446067 gtacacacattaacactcgccttacaactttctaaggaaaaaatgtgttacatttgagaggtcataaccgatgtgaagaaaaagagatcaaatatgtatt 4445968  T
Q  524 ccctccgtccaaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||    
T  4445967 ccctccgtccaaaaattaatcagcaaaagtcaatacattttgttcaaaatttgtaccaaatacatcaatttatattaacttatttttgcttatattttg 4445869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 179 - 352
Target Start/End: Complemental strand, 4446311 - 4446139
Alignment:
Q  179 tgttttctgctattgtttatcttaagcaacatgacacattttcaacaaacgttaaactataaataaactcactttaactgtcaaacgaattcataattta 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4446311 tgttttctgctattgtttatcttaagcaacatgacacattttcaacaaacgttaaactataaataaactcactttaactgtcaaacgaattcataattta 4446212  T
Q  279 ttttacaaactannnnnnnnnnncaaaagataaccaaaatctgtaaaaataaaattacaccgccaatccaatag 352  Q
    ||||||||||||           |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4446211 ttttacaaacta-ttttttttttcaaaagataaccaaaatctgtaaaaataaaattacaccgccaatacaatag 4446139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 548 - 630
Target Start/End: Original strand, 944802 - 944884
Alignment:
Q  548 aaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggag 630  Q
    |||||| |||| |||| ||||||||||||||||| ||||||||| |||| |||||| |||||| |||||||||||| ||||||    
T  944802 aaaagttaatgtatttagttcaaaatttgtaccaaatacatcaacttatgttgactaatttttacttacattttgagacggag 944884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 4446424 - 4446370
Alignment:
Q  21 caatttttgcgaatacataaaacatgatccacgggatgccactgatccagcgcac 75  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  4446424 caatttttgcgaatacataaaacattatccacgggatgccactgatccagtgcac 4446370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 533 - 622
Target Start/End: Complemental strand, 38935457 - 38935368
Alignment:
Q  533 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    ||||||||| ||| ||||||| |||| |||||||||||||| |||| || ||||||||| |||| |||||| ||||||||||| ||||||    
T  38935457 caaaaattactcaacaaaagttaatgtattttgttcaaaatctgtatcaaatacatcaacttatgttgactcatttttgcttatattttg 38935368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 547 - 621
Target Start/End: Complemental strand, 43398918 - 43398844
Alignment:
Q  547 caaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 621  Q
    ||||||| |||| |||| ||||||||||||||||| ||||||||| ||||||||||  |||||| ||||||||||    
T  43398918 caaaagttaatgtatttggttcaaaatttgtaccaaatacatcaacttatattgacccatttttacttacatttt 43398844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 560 - 621
Target Start/End: Complemental strand, 24037651 - 24037590
Alignment:
Q  560 attttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 621  Q
    |||||||||||||||||||||| ||| ||||| |||| |||||| |||||||||||||||||    
T  24037651 attttgttcaaaatttgtaccaaatatatcaacttatgttgactcatttttgcttacatttt 24037590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 533 - 622
Target Start/End: Original strand, 10459282 - 10459371
Alignment:
Q  533 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    ||||||||  ||| ||||||| |||| |||| |||||||||||||| ||||| |||||| |||| |||||  || |||||||||||||||    
T  10459282 caaaaattggtcaacaaaagttaatgtatttggttcaaaatttgtatcagatgcatcaacttatgttgaccaatctttgcttacattttg 10459371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 565 - 622
Target Start/End: Original strand, 16564424 - 16564481
Alignment:
Q  565 gttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    ||||||||||||||||| ||||||||| |||| |||||| |||||| |||||||||||    
T  16564424 gttcaaaatttgtaccaaatacatcaacttatgttgactcatttttacttacattttg 16564481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 627
Target Start/End: Complemental strand, 35311277 - 35311185
Alignment:
Q  534 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacg 627  Q
    |||| ||| ||| ||||||| |||| |||| ||||||||||||||| ||||| || || |||| |||||  |||||||||||||||||||||||    
T  35311277 aaaatttagtcaacaaaagttaatgtatttggttcaaaatttgtacaagatatat-aacttatgttgacccatttttgcttacattttgaaacg 35311185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 547 - 631
Target Start/End: Complemental strand, 16180515 - 16180431
Alignment:
Q  547 caaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggaga 631  Q
    ||||||| |||| |||| ||||||||||| ||    |||||||||||||| |||||| ||||||||||||||||||  |||||||    
T  16180515 caaaagttaatgtatttggttcaaaatttatatttaatacatcaatttatgttgactaatttttgcttacattttgggacggaga 16180431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 567 - 629
Target Start/End: Original strand, 41099028 - 41099090
Alignment:
Q  567 tcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacgga 629  Q
    ||||||||||||||| |||||| || |||| |||||  |||||||||||||||||| ||||||    
T  41099028 tcaaaatttgtaccaaatacattaacttatgttgacccatttttgcttacattttggaacgga 41099090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 610
Target Start/End: Original strand, 7932759 - 7932836
Alignment:
Q  533 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttattttt 610  Q
    ||||||||| ||| ||||||| || | |||| ||||||||||| || |||||||||||| |||| |||||| ||||||    
T  7932759 caaaaattagtcaacaaaagttaacgtatttggttcaaaatttatatcagatacatcaacttatgttgactcattttt 7932836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 610
Target Start/End: Complemental strand, 43465542 - 43465466
Alignment:
Q  534 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttattttt 610  Q
    |||||||| | | ||||||| |||| |||||||||||||||| |  ||||||||||||| | ||||||| |||||||    
T  43465542 aaaaattagttaacaaaagttaatgtattttgttcaaaatttatgtcagatacatcaatatttattgacctattttt 43465466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 555 - 622
Target Start/End: Original strand, 2949080 - 2949147
Alignment:
Q  555 aatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    |||| |||||||||||||||  |  || |||||||||||||| ||||| ||||||| |||||||||||    
T  2949080 aatgtattttgttcaaaattaatgtcatatacatcaatttatgttgacctatttttacttacattttg 2949147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 635
Target Start/End: Complemental strand, 4225038 - 4224969
Alignment:
Q  566 ttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggagagaat 635  Q
    |||||||||| |||||||||||||||||||| |||||  | |||| |||| |||||  |||||| |||||    
T  4225038 ttcaaaatttataccagatacatcaatttatgttgaccaacttttacttatattttagaacggaaagaat 4224969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 627
Target Start/End: Complemental strand, 41374622 - 41374529
Alignment:
Q  534 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacg 627  Q
    |||||||| ||| | ||||| |||| ||||  |||||| ||| ||||| ||||||||| || | || ||| |||||||||||||||||| ||||    
T  41374622 aaaaattagtcaacgaaagttaatgtatttgattcaaagtttataccaaatacatcaacttgtgttcactcatttttgcttacattttggaacg 41374529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 622
Target Start/End: Original strand, 43042214 - 43042271
Alignment:
Q  565 gttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    ||||||||||| || |||||||||||| || | || ||| ||||||||||||||||||    
T  43042214 gttcaaaatttatatcagatacatcaacttttgtttactcatttttgcttacattttg 43042271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 633
Target Start/End: Original strand, 11386325 - 11386425
Alignment:
Q  533 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggagag 632  Q
    |||||||| |||| ||||| | |||  ||||  ||||||||||||| || ||||||||| |||| ||||   | ||||||||| ||||||||||| ||||    
T  11386325 caaaaattgatcaacaaaaattaatatatttaattcaaaatttgtatcaaatacatcaacttatgttgatcaaattttgcttatattttgaaacgaagag 11386424  T
Q  633 a 633  Q
    |    
T  11386425 a 11386425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 621
Target Start/End: Original strand, 36597137 - 36597189
Alignment:
Q  569 aaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 621  Q
    |||||||||| ||||||||||||| ||||||||  |||||| ||||| |||||    
T  36597137 aaaatttgtaacagatacatcaatatatattgatctattttggcttatatttt 36597189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 533 - 622
Target Start/End: Original strand, 31323830 - 31323919
Alignment:
Q  533 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    ||||||||  ||| ||||||| |||| |||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||    
T  31323830 caaaaattggtcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttgacctatttttgcttacattttg 31323919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 547 - 624
Target Start/End: Complemental strand, 31522688 - 31522611
Alignment:
Q  547 caaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaa 624  Q
    ||||||| |||||||||  ||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||    
T  31522688 caaaagttaatgcatttgattcaaaatttgtaccagatacatcgttttatattaacttatttttgcttacattttgaa 31522611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 534 - 606
Target Start/End: Original strand, 9829908 - 9829980
Alignment:
Q  534 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttat 606  Q
    |||||||| ||| ||||| | |||| |||||||| ||||||||||||| |||||||||||||| |||||||||    
T  9829908 aaaaattagtcaacaaaaattaatgtattttgtttaaaatttgtaccaaatacatcaatttatgttgacttat 9829980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 568 - 630
Target Start/End: Complemental strand, 9675821 - 9675759
Alignment:
Q  568 caaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggag 630  Q
    ||||||||||||||||| |||||| |||| |||||  ||||||||||||||||||| ||||||    
T  9675821 caaaatttgtaccagatgcatcaacttatgttgaccaatttttgcttacattttgagacggag 9675759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 560 - 622
Target Start/End: Original strand, 30531221 - 30531283
Alignment:
Q  560 attttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    |||| ||||||| ||||||||| ||||||||| |||| |||| | ||||||||||||||||||    
T  30531221 atttggttcaaagtttgtaccaaatacatcaacttatgttgagtcatttttgcttacattttg 30531283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 534 - 615
Target Start/End: Original strand, 2282415 - 2282496
Alignment:
Q  534 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgctta 615  Q
    |||||||  ||| ||||||| |||| |||| |||||||| ||||| || |||||||||||||| || ||| |||||||||||    
T  2282415 aaaaattggtcaacaaaagttaatgtatttagttcaaaaattgtatcaaatacatcaatttatgttaactaatttttgctta 2282496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 631
Target Start/End: Original strand, 14222836 - 14222907
Alignment:
Q  560 attttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggaga 631  Q
    ||||| ||||||||||  |||| ||||||||| |||| |||||  |||||||||||||||||| ||| ||||    
T  14222836 attttattcaaaatttacaccatatacatcaacttatgttgacccatttttgcttacattttggaacagaga 14222907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 622
Target Start/End: Original strand, 14446726 - 14446801
Alignment:
Q  547 caaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    ||||||| |||| || ||||||||||||| ||  ||||||||||| ||| ||||||  |||||| |||||||||||    
T  14446726 caaaagttaatgtatgttgttcaaaatttatattagatacatcaacttacattgaccaatttttacttacattttg 14446801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 623
Target Start/End: Original strand, 33822305 - 33822394
Alignment:
Q  534 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttga 623  Q
    ||||||| || | ||||||| |||  |||| |||||||||||||| || ||||||||| ||||||| |   |||||| ||||||||||||    
T  33822305 aaaaattgattaacaaaagttaatatatttagttcaaaatttgtatcaaatacatcaacttatattaatccatttttacttacattttga 33822394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 533 - 626
Target Start/End: Complemental strand, 54235316 - 54235223
Alignment:
Q  533 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaac 626  Q
    ||||||||  ||| ||||||| |||| |||| ||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||    
T  54235316 caaaaattgctcaacaaaagttaatgtatttggttcaaaatttgtactaaatacatcaatttatattgactcatttttgcttacattttgaaac 54235223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 555 - 621
Target Start/End: Complemental strand, 5496923 - 5496857
Alignment:
Q  555 aatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 621  Q
    |||| |||| ||||||||||||||||| ||| ||||| ||||||||||| ||||||| |||||||||    
T  5496923 aatgtatttggttcaaaatttgtaccaaataaatcaacttatattgactcatttttgtttacatttt 5496857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 566 - 622
Target Start/End: Original strand, 4423198 - 4423254
Alignment:
Q  566 ttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    |||||||||||||||| ||||||||| |||||||||   ||||||||||||||||||    
T  4423198 ttcaaaatttgtaccaaatacatcaacttatattgatccatttttgcttacattttg 4423254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 543 - 622
Target Start/End: Original strand, 12276846 - 12276925
Alignment:
Q  543 tcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    ||||||||||| |||| ||||  |||||||||| ||| | ||||||||| |||| ||||| |||||||||||| ||||||    
T  12276846 tcagcaaaagttaatgtatttgattcaaaatttatactaaatacatcaacttatgttgacctatttttgcttatattttg 12276925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 533 - 622
Target Start/End: Complemental strand, 30848686 - 30848595
Alignment:
Q  533 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtac--cagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    ||||||||  ||| ||||| | |||| ||||||||||||||||||||   ||||||||||| |||| ||||   ||||||||||||||||||    
T  30848686 caaaaattggtcaacaaaaattaatgtattttgttcaaaatttgtacattagatacatcaacttatgttgatccatttttgcttacattttg 30848595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 548 - 622
Target Start/End: Complemental strand, 18995210 - 18995138
Alignment:
Q  548 aaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    |||||| |||| |||| |||||||||||||| |||||||||||| |||| ||||||  |||||||||| ||||||    
T  18995210 aaaagttaatgtatttggttcaaaatttgta-cagatacatcaacttat-ttgactactttttgcttatattttg 18995138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 621
Target Start/End: Original strand, 5024679 - 5024752
Alignment:
Q  548 aaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 621  Q
    |||||| |||| ||||  |||||||||| || || ||||| ||||||||||||||| ||||||  |||||||||    
T  5024679 aaaagttaatgtatttatttcaaaatttatatcaaatacaacaatttatattgactcatttttaattacatttt 5024752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 630
Target Start/End: Complemental strand, 24980719 - 24980622
Alignment:
Q  533 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggag 630  Q
    ||||||||  ||| ||||| | |||| ||||||| ||||||||||  |||||||||||| |||| ||||   |||||| ||||||||||  |||||||    
T  24980719 caaaaatttgtcaacaaaaattaatgtattttgtacaaaatttgtgtcagatacatcaacttatgttgatccatttttacttacattttagaacggag 24980622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 533 - 622
Target Start/End: Complemental strand, 32221564 - 32221475
Alignment:
Q  533 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    ||||||||| ||| ||||||| |||| |||| ||||||||||||||||| ||||||||||||||  |||   ||||||||||||||||||    
T  32221564 caaaaattagtcaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaatttatgctgatcaatttttgcttacattttg 32221475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 548 - 630
Target Start/End: Original strand, 47783109 - 47783191
Alignment:
Q  548 aaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggag 630  Q
    |||||| |||| |||| |||||||||||||| ||||||||||   |||| |||||| ||||||||||| |||||| |||||||    
T  47783109 aaaagttaatgtatttggttcaaaatttgtatcagatacatcggcttatgttgactcatttttgcttatattttggaacggag 47783191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 555 - 630
Target Start/End: Original strand, 18364206 - 18364280
Alignment:
Q  555 aatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggag 630  Q
    |||| ||||||||||||||||||  |||||||||||| |||| || ||  |||||||||||||||||| |||||||    
T  18364206 aatgtattttgttcaaaatttgtgtcagatacatcaacttatgttaac-catttttgcttacattttggaacggag 18364280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 555 - 621
Target Start/End: Original strand, 26104256 - 26104322
Alignment:
Q  555 aatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 621  Q
    |||| |||| |||||||||||||| || | | |||||||||| |||||| |||||||||||||||||    
T  26104256 aatgtatttagttcaaaatttgtatcaaacaaatcaatttatgttgactcatttttgcttacatttt 26104322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 621
Target Start/End: Complemental strand, 29637500 - 29637439
Alignment:
Q  560 attttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 621  Q
    |||| |||||||||||||| || ||| || ||||||| ||||||||||||| ||||||||||    
T  29637500 atttggttcaaaatttgtatcaaatatattaatttatgttgacttattttttcttacatttt 29637439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 622
Target Start/End: Original strand, 31280172 - 31280260
Alignment:
Q  534 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    ||||||| |||| ||||| | |||| |||| ||||||||||||||||| |||||| ||||||| ||||   |||||| ||||| |||||    
T  31280172 aaaaattgatcaacaaaatttaatgtatttggttcaaaatttgtaccatatacattaatttatgttgatccatttttccttaccttttg 31280260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 621
Target Start/End: Original strand, 37330975 - 37331031
Alignment:
Q  565 gttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 621  Q
    ||||||||||||||| |||||| ||||||||| || ||  |||||||||||||||||    
T  37330975 gttcaaaatttgtactagatacgtcaatttatgttaacccatttttgcttacatttt 37331031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 630
Target Start/End: Original strand, 32221486 - 32221583
Alignment:
Q  533 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggag 630  Q
    |||||||| ||||||| || |  ||| |||| || |||| |||| |||| |||||| || || | |||||| ||||||||||||||||||| ||||||    
T  32221486 caaaaattgatcagcataaattgatgtatttggtacaaattttgaaccaaatacattaacttttgttgactaatttttgcttacattttgatacggag 32221583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 534 - 621
Target Start/End: Original strand, 37928 - 38015
Alignment:
Q  534 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 621  Q
    |||||||| ||| ||||||| |||| |||| ||| ||||||| ||||| |||||||||||||||||||||  |||||| |||||||||    
T  37928 aaaaattagtcaacaaaagttaatgtatttggtttaaaatttataccaaatacatcaatttatattgactcgtttttgtttacatttt 38015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 547 - 622
Target Start/End: Original strand, 44816497 - 44816572
Alignment:
Q  547 caaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    ||||||| |||| |||| ||||||||||||||||| |||||||| |||||||| | | ||||||||||||||||||    
T  44816497 caaaagttaatgtatttggttcaaaatttgtaccaaatacatcagtttatattaattcatttttgcttacattttg 44816572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 560 - 621
Target Start/End: Complemental strand, 23971252 - 23971191
Alignment:
Q  560 attttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 621  Q
    |||| ||||||||||||||||| ||||||||| ||||||||| ||||||||||||| |||||    
T  23971252 atttagttcaaaatttgtaccaaatacatcaacttatattgatttatttttgcttatatttt 23971191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 555 - 623
Target Start/End: Complemental strand, 32652478 - 32652410
Alignment:
Q  555 aatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttga 623  Q
    |||| |||| ||||||| ||||||||| ||||| |||||||| ||||||||||||| ||||||||||||    
T  32652478 aatgtatttggttcaaagtttgtaccaaatacaccaatttatgttgacttatttttacttacattttga 32652410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 548 - 622
Target Start/End: Complemental strand, 18732069 - 18731995
Alignment:
Q  548 aaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    |||||| |||| |||| ||||||||||| |||||||||||||||||||| ||||   ||||||||||| ||||||    
T  18732069 aaaagttaatgtatttggttcaaaatttataccagatacatcaatttatgttgatccatttttgcttatattttg 18731995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 560 - 630
Target Start/End: Complemental strand, 1554902 - 1554833
Alignment:
Q  560 attttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggag 630  Q
    |||||||| ||||||||||| ||||| |||||   ||||||| ||||||||||||||||||||| ||||||    
T  1554902 attttgtttaaaatttgtactagatatatcaaaa-atattgatttatttttgcttacattttgagacggag 1554833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 560 - 633
Target Start/End: Complemental strand, 968349 - 968276
Alignment:
Q  560 attttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggagaga 633  Q
    |||| ||||||||||||||||| ||||||||| ||| ||||||  | |||| ||||||||||||||||||||||    
T  968349 atttagttcaaaatttgtaccaaatacatcaacttaaattgacccacttttacttacattttgaaacggagaga 968276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 555 - 621
Target Start/End: Original strand, 9530951 - 9531017
Alignment:
Q  555 aatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 621  Q
    |||| |||| ||||||||||| || || ||||| ||||||||||||||| |||||||||||||||||    
T  9530951 aatgtatttggttcaaaatttatatcaaatacaccaatttatattgactcatttttgcttacatttt 9531017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 566 - 621
Target Start/End: Complemental strand, 14646423 - 14646368
Alignment:
Q  566 ttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 621  Q
    |||||||||||||| | |||||| ||||||||||||||||||||| |||| |||||    
T  14646423 ttcaaaatttgtactaaatacattaatttatattgacttatttttacttatatttt 14646368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 569 - 623
Target Start/End: Original strand, 5727767 - 5727821
Alignment:
Q  569 aaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttga 623  Q
    ||||||||||||||||||||||| ||||  |||| ||||||| ||||||||||||    
T  5727767 aaaatttgtaccagatacatcaacttattgtgacctatttttacttacattttga 5727821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 548 - 622
Target Start/End: Complemental strand, 33670006 - 33669932
Alignment:
Q  548 aaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    |||||| |||| |||| ||| |||||||||||||||||||  || |||| |||||  ||||||||||||||||||    
T  33670006 aaaagttaatgtatttggtttaaaatttgtaccagatacactaacttatgttgacccatttttgcttacattttg 33669932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 622
Target Start/End: Original strand, 39030579 - 39030668
Alignment:
Q  533 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    ||||||||  ||| ||||||| |||| |||| ||| ||||||||||||| |||||| || || | |||||| ||||||||||| ||||||    
T  39030579 caaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgcttatattttg 39030668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 542 - 625
Target Start/End: Original strand, 30293401 - 30293484
Alignment:
Q  542 atcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaa 625  Q
    |||| |||||||||||| ||||  |||||||||| || || |||||||||  ||| |||||| |||||| |||| |||||||||    
T  30293401 atcaacaaaagtcaatgtatttgattcaaaatttatatcaaatacatcaacatatgttgactcatttttacttatattttgaaa 30293484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 621
Target Start/End: Complemental strand, 2424517 - 2424444
Alignment:
Q  548 aaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 621  Q
    |||||| |||| |||| ||||||||||||||||| ||||||||  |||| || ||  ||||||||||| |||||    
T  2424517 aaaagttaatgtatttggttcaaaatttgtaccatatacatcagcttatgttaacaaatttttgcttatatttt 2424444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 633
Target Start/End: Complemental strand, 25467185 - 25467100
Alignment:
Q  548 aaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggagaga 633  Q
    |||||| |||| || | ||||||||||| || | |||||||||| |||| || |   ||||||||||||||||||| |||||||||    
T  25467185 aaaagttaatgtatgtggttcaaaatttatatcggatacatcaacttatgttaatccatttttgcttacattttgagacggagaga 25467100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 622
Target Start/End: Original strand, 34252733 - 34252822
Alignment:
Q  533 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    ||||||||  ||| ||||||| |||| |||| ||||||||||| | ||| || |||||| |||| || ||  ||||||||||||||||||    
T  34252733 caaaaattggtcaacaaaagttaatgtatttggttcaaaatttatgccacattcatcaacttatgttaacccatttttgcttacattttg 34252822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 602
Target Start/End: Complemental strand, 42324973 - 42324905
Alignment:
Q  534 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgac 602  Q
    |||||||  ||| ||||||| |||| ||||  || ||||||| ||||| ||||||||||||||||||||    
T  42324973 aaaaattggtcaacaaaagttaatgtatttgttttaaaatttataccaaatacatcaatttatattgac 42324905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 534 - 622
Target Start/End: Original strand, 35957 - 36045
Alignment:
Q  534 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    ||||||| |||| |||  || |||| |||| || ||||||||||| || ||||||||||||||||||||| ||||||| ||||||||||    
T  35957 aaaaattgatcaacaaccgttaatgtatttggtacaaaatttgtatcaaatacatcaatttatattgactcatttttgtttacattttg 36045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 565 - 629
Target Start/End: Complemental strand, 29798002 - 29797938
Alignment:
Q  565 gttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacgga 629  Q
    ||||||||||||||||| |||||| ||||||| || ||| |||||||||||||||||| ||||||    
T  29798002 gttcaaaatttgtaccaaatacataaatttatgttaactcatttttgcttacattttggaacgga 29797938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 533 - 602
Target Start/End: Original strand, 13209980 - 13210049
Alignment:
Q  533 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgac 602  Q
    |||||||| |||| ||||||| |||| |||| |||||||||||||| |||||||||||| |||| |||||    
T  13209980 caaaaattgatcaacaaaagttaatgtatttggttcaaaatttgtatcagatacatcaacttatgttgac 13210049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 533 - 621
Target Start/End: Complemental strand, 29111053 - 29110965
Alignment:
Q  533 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 621  Q
    |||||||| |||| | ||| | |||| |||| ||||||||||| ||||| ||||||  |||||||||||| |||| |||||||||||||    
T  29111053 caaaaattgatcaacgaaacttaatgtatttggttcaaaatttataccaaatacattcatttatattgacctattattgcttacatttt 29110965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 566 - 621
Target Start/End: Complemental strand, 37627971 - 37627916
Alignment:
Q  566 ttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 621  Q
    ||||||||||||| || ||||||||| ||||||| |||||||||| ||||||||||    
T  37627971 ttcaaaatttgtatcaaatacatcaacttatattaacttatttttacttacatttt 37627916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 534 - 629
Target Start/End: Original strand, 30693352 - 30693447
Alignment:
Q  534 aaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacgga 629  Q
    ||||||| |||| ||||| | |||| ||||  |||||||||||||||| ||||||||  |||| |||| | |||||| ||||||||||||||||||    
T  30693352 aaaaattgatcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacatcatattatgttgattcatttttacttacattttgaaacgga 30693447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 555 - 622
Target Start/End: Original strand, 31784773 - 31784840
Alignment:
Q  555 aatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    |||| |||||||||||||||||||  ||||||||||| |||| |||||  ||||||||||||||||||    
T  31784773 aatgtattttgttcaaaatttgtattagatacatcaacttatgttgacaaatttttgcttacattttg 31784840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 620
Target Start/End: Complemental strand, 5693646 - 5693581
Alignment:
Q  555 aatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattt 620  Q
    ||||||||| ||| ||||||||||| | | |||||||||||| ||||  |||||||||||||||||    
T  5693646 aatgcatttggtttaaaatttgtactaaaaacatcaatttatgttgatatatttttgcttacattt 5693581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 631
Target Start/End: Complemental strand, 26265846 - 26265775
Alignment:
Q  560 attttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttgaaacggaga 631  Q
    |||| ||||||||||| ||| | ||||||||| |||| || || ||||||||||||||||||| || |||||    
T  26265846 atttggttcaaaatttatactaaatacatcaacttatgttaacatatttttgcttacattttggaatggaga 26265775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 622
Target Start/End: Complemental strand, 37918994 - 37918919
Alignment:
Q  547 caaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    ||||||| |||| |||| ||| ||||||| || || ||||||||| |||| |||| | ||||||||||||||||||    
T  37918994 caaaagtgaatgtatttggtttaaaatttatatcaaatacatcaacttatgttgattcatttttgcttacattttg 37918919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 622
Target Start/End: Complemental strand, 3694048 - 3693992
Alignment:
Q  566 ttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacattttg 622  Q
    |||||||||||||  | |||||||||||||| |||||| |||| | |||||||||||    
T  3694048 ttcaaaatttgtattaaatacatcaatttatgttgactcatttctacttacattttg 3693992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 599
Target Start/End: Complemental strand, 27527777 - 27527733
Alignment:
Q  555 aatgcattttgttcaaaatttgtaccagatacatcaatttatatt 599  Q
    |||| |||| ||||||||||| ||||||||||||||| |||||||    
T  27527777 aatgtatttggttcaaaatttataccagatacatcaacttatatt 27527733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 533 - 621
Target Start/End: Original strand, 13190 - 13278
Alignment:
Q  533 caaaaattaatcagcaaaagtcaatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 621  Q
    |||||||  |||| ||||||| |||| |||| ||| ||||||||||| ||||||||||| ||||||| |||  ||||| ||||||||||    
T  13190 caaaaatggatcaacaaaagttaatgtatttggtttaaaatttgtacaagatacatcaacttatattaactcgtttttacttacatttt 13278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 621
Target Start/End: Original strand, 94984 - 95050
Alignment:
Q  555 aatgcattttgttcaaaatttgtaccagatacatcaatttatattgacttatttttgcttacatttt 621  Q
    |||| ||| |||||||||||||||||| ||||||||| |||| |||||  ||||||  |||||||||    
T  94984 aatgtattatgttcaaaatttgtaccaaatacatcaacttatgttgaccaattttttattacatttt 95050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University