View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12536_low_4 (Length: 551)
Name: NF12536_low_4
Description: NF12536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12536_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 118 - 526
Target Start/End: Complemental strand, 38241848 - 38241442
Alignment:
| Q |
118 |
gtgaatttgggtgaccaaaagtacattaatttaagccaacatagtttatgcaattttcatatcctaatgagattagaaaaagtgaattttctaagtgtag |
217 |
Q |
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| T |
38241848 |
gtgaatttgggtgaccaaaagtacatt----taagccaacataatttatgcaattttcatatcctaatgagattagaaaaagtgaattttctaagtgtag |
38241753 |
T |
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| Q |
218 |
tttgaagtagacaaattgcatttaaaacagaagtactttttcataacctaatgtactttcatttatgtaattggtgcaaggtttaattatttaagtgtgg |
317 |
Q |
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| T |
38241752 |
tttgaagtagacaaattgcatttaaaacagaagtactttttcataacctaatgtactttcatttatgtaattggtgcaaggtttaattatttaagtgtgg |
38241653 |
T |
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| Q |
318 |
ctgcaagtttttgggaaaggatttgtgcagggtctctcattagagtgatctgcataattatgtaggttgagtcttgtatgtgtgattggagaatggcaca |
417 |
Q |
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| T |
38241652 |
ctgcaagtttttgggaaaggatttgtgcagggtctctcattagagtgatctgcataattatgtaggttgagtcttgtatgtgtgattggagaatggcaca |
38241553 |
T |
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| Q |
418 |
atttgtt-aagtgattgcatgctacaatgaatgtagtaatcgttgggatgctttgttttcgtaatttg-nnnnnnncttagccagcttataactgttaga |
515 |
Q |
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| T |
38241552 |
atttgttaaagtgattgcgtgctacaatgaacgtagtaatcgttgggatgctttgttttcgtaatttgtttttttgcttagtcagcttaaatctgttaga |
38241453 |
T |
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| Q |
516 |
ttttcctcgca |
526 |
Q |
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| T |
38241452 |
ttttcctcgca |
38241442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 38241942 - 38241877
Alignment:
| Q |
19 |
catataagctctacaacgtcattaatggatagaccacaaacctaaatccaaaaatgctatgaggat |
84 |
Q |
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| T |
38241942 |
catataagctctaccacgtcattaatggatagaccacaaacctaaatccaaaaatgctatgaggat |
38241877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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