View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12536_low_6 (Length: 440)

Name: NF12536_low_6
Description: NF12536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12536_low_6
NF12536_low_6
[»] chr4 (17 HSPs)
chr4 (22-416)||(24627352-24627754)
chr4 (312-415)||(1505334-1505437)
chr4 (312-415)||(13701952-13702055)
chr4 (312-415)||(13712445-13712548)
chr4 (22-183)||(5576837-5576996)
chr4 (336-415)||(5599246-5599325)
chr4 (312-415)||(6735729-6735832)
chr4 (321-415)||(2895140-2895234)
chr4 (321-415)||(5908492-5908586)
chr4 (326-406)||(1604700-1604780)
chr4 (327-415)||(5579109-5579196)
chr4 (360-410)||(3329498-3329548)
chr4 (321-415)||(4852035-4852129)
chr4 (357-415)||(7451206-7451264)
chr4 (317-385)||(31663869-31663937)
chr4 (22-133)||(1506879-1506990)
chr4 (347-425)||(20349574-20349651)
[»] chr3 (13 HSPs)
chr3 (312-415)||(2747061-2747164)
chr3 (312-415)||(18111086-18111189)
chr3 (312-415)||(5835271-5835374)
chr3 (22-197)||(14529919-14530092)
chr3 (312-415)||(28034333-28034436)
chr3 (326-415)||(19440710-19440799)
chr3 (317-415)||(37489369-37489467)
chr3 (326-415)||(19359870-19359959)
chr3 (312-415)||(5938380-5938483)
chr3 (321-415)||(14521644-14521738)
chr3 (24-132)||(2746165-2746274)
chr3 (326-410)||(27170125-27170209)
chr3 (321-406)||(7782837-7782922)
[»] chr2 (11 HSPs)
chr2 (317-412)||(31347376-31347471)
chr2 (312-415)||(31314640-31314743)
chr2 (67-172)||(3811479-3811584)
chr2 (22-135)||(20112445-20112558)
chr2 (322-410)||(38211348-38211436)
chr2 (330-402)||(17863237-17863309)
chr2 (321-385)||(29742307-29742371)
chr2 (328-406)||(18010915-18010992)
chr2 (326-406)||(29747149-29747229)
chr2 (360-410)||(27085368-27085418)
chr2 (365-406)||(33125425-33125466)
[»] scaffold0046 (1 HSPs)
scaffold0046 (312-415)||(89835-89938)
[»] chr6 (8 HSPs)
chr6 (312-415)||(5131326-5131429)
chr6 (312-415)||(31113617-31113720)
chr6 (22-133)||(5130226-5130337)
chr6 (336-415)||(33301138-33301217)
chr6 (321-415)||(28144384-28144478)
chr6 (321-415)||(34256188-34256282)
chr6 (317-416)||(6406200-6406292)
chr6 (336-415)||(8519272-8519351)
[»] chr1 (11 HSPs)
chr1 (312-415)||(51843938-51844041)
chr1 (317-415)||(15088256-15088354)
chr1 (317-415)||(22210864-22210962)
chr1 (330-417)||(1991595-1991682)
chr1 (317-415)||(22219614-22219712)
chr1 (326-410)||(14150123-14150207)
chr1 (312-415)||(7898985-7899088)
chr1 (321-415)||(14115539-14115633)
chr1 (317-415)||(22207301-22207399)
chr1 (312-417)||(44193448-44193553)
chr1 (347-410)||(7064029-7064092)
[»] chr8 (7 HSPs)
chr8 (312-415)||(25336120-25336223)
chr8 (37-182)||(20809708-20809851)
chr8 (326-415)||(5557119-5557208)
chr8 (321-415)||(20811015-20811109)
chr8 (327-415)||(3166424-3166512)
chr8 (326-406)||(4844424-4844504)
chr8 (340-424)||(25004005-25004088)
[»] chr7 (8 HSPs)
chr7 (321-415)||(19802243-19802337)
chr7 (321-415)||(21959205-21959299)
chr7 (321-415)||(42786498-42786592)
chr7 (321-415)||(48477394-48477488)
chr7 (339-424)||(3737876-3737960)
chr7 (317-414)||(3079019-3079116)
chr7 (340-409)||(20920353-20920422)
chr7 (336-415)||(4340539-4340618)
[»] scaffold0158 (2 HSPs)
scaffold0158 (336-415)||(1-80)
scaffold0158 (321-415)||(37442-37536)
[»] chr5 (4 HSPs)
chr5 (326-415)||(41527873-41527962)
chr5 (326-410)||(22301883-22301967)
chr5 (336-416)||(26075651-26075731)
chr5 (326-401)||(23213637-23213713)
[»] scaffold0043 (2 HSPs)
scaffold0043 (336-415)||(70138-70217)
scaffold0043 (24-132)||(69120-69229)
[»] scaffold0024 (1 HSPs)
scaffold0024 (336-416)||(63462-63542)
[»] scaffold0060 (1 HSPs)
scaffold0060 (341-415)||(45204-45278)


Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 22 - 416
Target Start/End: Complemental strand, 24627754 - 24627352
Alignment:
Q  22 tcggattaggaataaattcagaaaacacatttaaagtttggaaatttatgcttgaaattgcttacgggtttgacatggatttttccaggataagctaaaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24627754 tcggattaggaataaattcagaaaacacatttaaagtttggaaatttatgcttgaaattacttacgggtttgacatggatttttccaggataagctaaaa 24627655  T
Q  122 cgtgaatttaagatggttataaatgattccaggattgattatggatgcccacatggttgagcaagagtttggttgaaatcaggacgtaaaagttagaggc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24627654 cgtgaatttaagatggttataaatgattccaggattgattatggatgcccacatggttgagcaagagtttggttgaaatcaggacgtaaaagttagaggc 24627555  T
Q  222 agaatcaataagctgaaataagctgttttggagaaatagcggtcttagttttcccctgatcgc--------gcagataagaacgatataaacccaaaatg 313  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        |||||||||||| ||||||||||||||||    
T  24627554 ggaatcaataagctgaaataagctgttttggagaaatagtggtcttagttttcccctgatcgctctgttatgcagataagaacaatataaacccaaaatg 24627455  T
Q  314 agattagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttat 413  Q
    |||||||||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24627454 agattagaacatatggcgatcataggttccctgagattgcctacatcctaggataggtggaactcgctgagacatcatgtgtcaccccaatcctttttat 24627355  T
Q  414 ttt 416  Q
    |||    
T  24627354 ttt 24627352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 415
Target Start/End: Complemental strand, 1505437 - 1505334
Alignment:
Q  312 tgagattagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatccttttt 411  Q
    |||| |||||||| ||||||||  |||||||||||||||||| |||| |||| |||||||||||||| || ||||||| ||| |||||||||||| ||||    
T  1505437 tgagtttagaacagatggcgatcctaggttccctgagattgcctacaacctaggataggtggaactcactaagacatcttgtctcaccccaatccctttt 1505338  T
Q  412 attt 415  Q
    ||||    
T  1505337 attt 1505334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 415
Target Start/End: Complemental strand, 13702055 - 13701952
Alignment:
Q  312 tgagattagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatccttttt 411  Q
    |||| |||||||| ||||||||  |||||| ||||||||||| |||| |||| |||||||||||||| |||||||||| | | |||||||||||| ||||    
T  13702055 tgagtttagaacagatggcgatcgtaggtttcctgagattgcgtacaacctaggataggtggaactcactgagacatcttatctcaccccaatccctttt 13701956  T
Q  412 attt 415  Q
    ||||    
T  13701955 attt 13701952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 415
Target Start/End: Complemental strand, 13712548 - 13712445
Alignment:
Q  312 tgagattagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatccttttt 411  Q
    |||| |||||||| ||||||||  |||||| ||||||||||| |||| |||| |||||||||||||| |||||||||| | | |||||||||||| ||||    
T  13712548 tgagtttagaacagatggcgatcgtaggtttcctgagattgcgtacaacctaggataggtggaactcactgagacatcttatctcaccccaatccctttt 13712449  T
Q  412 attt 415  Q
    ||||    
T  13712448 attt 13712445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 5576837 - 5576996
Alignment:
Q  22 tcggattaggaataaattcagaaaacacatttaaagtttggaaatttatgcttgaaattgcttacgggtttgacatggatttttccaggataagctaaaa 121  Q
    |||||||| ||||  | ||||||||| ||||||||||||||||||| |||| ||||| ||  |||||||||||  |||||||||||   |||||||| |     
T  5576837 tcggattaagaatggactcagaaaacgcatttaaagtttggaaattcatgc-tgaaaatggctacgggtttgatgtggatttttccgaaataagctacat 5576935  T
Q  122 cgtgaatttaagatggttataaatgattccaggattgattatggatgcccacatggttgagc 183  Q
     ||||||| ||  ||||||||||||||| |||| || |||||||||||||  ||||||||||    
T  5576936 tgtgaattcaaattggttataaatgatttcagg-ttaattatggatgcccttatggttgagc 5576996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 415
Target Start/End: Complemental strand, 5599325 - 5599246
Alignment:
Q  336 taggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    ||||||||||||| |||| |||| |||| ||||| |||||||| |||||||||| ||| |||||||||||||||||||||    
T  5599325 taggttccctgaggttgcctacaacctaggatagatggaactcactgagacatcttgtctcaccccaatcctttttattt 5599246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 312 - 415
Target Start/End: Original strand, 6735729 - 6735832
Alignment:
Q  312 tgagattagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatccttttt 411  Q
    |||| ||||| |||||||||||  |||||||||| ||||| | |||| | || |||||||||||||| |||||||||||||| ||| |||||||| ||||    
T  6735729 tgagtttagagcatatggcgatcctaggttccctaagatttcctacagcttaggataggtggaactcactgagacatcatgtctcatcccaatccatttt 6735828  T
Q  412 attt 415  Q
    ||||    
T  6735829 attt 6735832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 415
Target Start/End: Original strand, 2895140 - 2895234
Alignment:
Q  321 aacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||| ||||||||  ||||||||| ||| |||| || | |||| |||||||||||||| |||||||||| ||| |||||||||||| ||||||||    
T  2895140 aacagatggcgatcctaggttccccgaggttgcctatagcctaggataggtggaactcactgagacatcttgtctcaccccaatcccttttattt 2895234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 415
Target Start/End: Complemental strand, 5908586 - 5908492
Alignment:
Q  321 aacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||| ||||||||  ||||||||| ||| |||| || | |||| |||||||||||||| |||||||||| ||| |||||||||||| ||||||||    
T  5908586 aacagatggcgatcctaggttccccgaggttgcctatagcctaggataggtggaactcactgagacatcttgtctcaccccaatcccttttattt 5908492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 406
Target Start/End: Original strand, 1604700 - 1604780
Alignment:
Q  326 atggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcc 406  Q
    ||||||||||||||||||||||  | || |||| |||| |||||||||||||| ||||||| || ||| ||||||||||||    
T  1604700 atggcgattataggttccctgaagtcgcctacaacctaggataggtggaactcactgagacctcctgtctcaccccaatcc 1604780  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 415
Target Start/End: Original strand, 5579109 - 5579196
Alignment:
Q  327 tggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||||||  ||||||||| |||||| | |||| ||||||||||||||||||| | |||||||  ||| ||| |||||||||||||||||    
T  5579109 tggcgatcctaggttccccgagatttcctacagcctatgataggtggaactcaccgagacattttgtctca-cccaatcctttttattt 5579196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 3329498 - 3329548
Alignment:
Q  360 cctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttt 410  Q
    |||| |||||||||||||| |||||||||| ||| ||||||||||||||||    
T  3329498 cctaagataggtggaactcactgagacatcttgtctcaccccaatcctttt 3329548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 415
Target Start/End: Complemental strand, 4852129 - 4852035
Alignment:
Q  321 aacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||| ||||||||  ||||||||| ||| |||| |||| |||| ||||||||||||||  ||| ||||| ||| ||| |||||||| ||||||||    
T  4852129 aacaaatggcgatcctaggttccccgaggttgcctacaacctaggataggtggaactcagtgaaacatcttgtctcatcccaatcccttttattt 4852035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 415
Target Start/End: Complemental strand, 7451264 - 7451206
Alignment:
Q  357 caccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    ||||||| |||||||||||||  ||||||| | |||| |||||||||||||||||||||    
T  7451264 caccctaggataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 7451206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 385
Target Start/End: Original strand, 31663869 - 31663937
Alignment:
Q  317 ttagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgaga 385  Q
    |||||||||||| |||| ||||||| | ||||||||  |||| |||| |||||||||||||| ||||||    
T  31663869 ttagaacatatgtcgatcataggtttcttgagattgtctacaacctaggataggtggaactcactgaga 31663937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 1506990 - 1506879
Alignment:
Q  22 tcggattaggaataaattcagaaaacacatttaaagtttggaaatttatgcttgaaattgcttacgggtttgacatggatttttccaggataagctaaaa 121  Q
    |||||||| ||||  | ||||||||| ||||||||||||| ||| || ||||  || || ||||| |||||||| | ||||||||    |||||||||||    
T  1506990 tcggattaagaatggactcagaaaacgcatttaaagtttgtaaaattctgctgaaatttacttactggtttgacgtagatttttctgaaataagctaaaa 1506891  T
Q  122 cgtgaatttaag 133  Q
    ||||||| ||||    
T  1506890 cgtgaatctaag 1506879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 425
Target Start/End: Original strand, 20349574 - 20349651
Alignment:
Q  347 agattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttatttttatctcagt 425  Q
    ||||||| |||| ||||  ||||||||||||| |||||||||| ||| ||| |||||| | |||||||||||| |||||    
T  20349574 agattgcctacagcctagtataggtggaactcactgagacatcttgtctcatcccaattc-ttttatttttatttcagt 20349651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 312 - 415
Target Start/End: Original strand, 2747061 - 2747164
Alignment:
Q  312 tgagattagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatccttttt 411  Q
    |||||||| |||||||||||||  |||||||||||||||||| |||| |||| |||||||||||||| |||||||||| ||| |||||||||||| ||||    
T  2747061 tgagattaaaacatatggcgatcctaggttccctgagattgcctacaacctaggataggtggaactcactgagacatcctgtctcaccccaatccctttt 2747160  T
Q  412 attt 415  Q
    ||||    
T  2747161 attt 2747164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 312 - 415
Target Start/End: Complemental strand, 18111189 - 18111086
Alignment:
Q  312 tgagattagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatccttttt 411  Q
    ||||||||||||| ||||||||  |||||||||||| ||||| |||| |||| |||||||||||||| |||||||||||||| ||||||| |||| ||||    
T  18111189 tgagattagaacagatggcgatcctaggttccctgatattgcctacaacctaggataggtggaactcactgagacatcatgtctcaccccgatccctttt 18111090  T
Q  412 attt 415  Q
    ||||    
T  18111089 attt 18111086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 415
Target Start/End: Complemental strand, 5835374 - 5835271
Alignment:
Q  312 tgagattagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatccttttt 411  Q
    |||| |||||||||||| ||||  |||||||||||||||||| || | |||| |||||||||||||| |||||||||| | | |||||||||||| ||||    
T  5835374 tgagtttagaacatatgacgatcctaggttccctgagattgcctatagcctaggataggtggaactcactgagacatcctatctcaccccaatccctttt 5835275  T
Q  412 attt 415  Q
    ||||    
T  5835274 attt 5835271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 14529919 - 14530092
Alignment:
Q  22 tcggattaggaataaattcagaaaacacatttaaagtttggaaatttatgcttgaaattgcttacgggtttgacatggatttttccaggataagctaaaa 121  Q
    |||||||| ||||  | ||||||||||||||||||||||||||||| |||| ||||| ||  |||||||||||  |||||||||||   |||||||| ||    
T  14529919 tcggattaagaatggactcagaaaacacatttaaagtttggaaattcatgc-tgaaaatggctacgggtttgatgtggatttttccgaaataagctacaa 14530017  T
Q  122 cgtgaatttaagatggttataaatgattccaggattgattatggatgcccacatggttgagcaagagtttggttga 197  Q
     ||||||| ||  ||||||||||||||| |||| || ||||| ||||| |  ||||||||||| ||  ||||||||    
T  14530018 tgtgaattcaaattggttataaatgatttcagg-ttaattatagatgcacttatggttgagcatgaagttggttga 14530092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 415
Target Start/End: Complemental strand, 28034436 - 28034333
Alignment:
Q  312 tgagattagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatccttttt 411  Q
    |||| |||||||||||||||||  |||||||| |||||||||  ||| |||| ||||||||||| || |||||||||| ||| |||||||||||| ||||    
T  28034436 tgagtttagaacatatggcgatcctaggttccttgagattgccaacaacctaggataggtggaattcactgagacatcttgtctcaccccaatccctttt 28034337  T
Q  412 attt 415  Q
    ||||    
T  28034336 attt 28034333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 415
Target Start/End: Complemental strand, 19440799 - 19440710
Alignment:
Q  326 atggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    ||||||||  |||||||| ||||||||| |||| |||| |||||||||||||| |||||||||||||| ||||| |||||| ||||||||    
T  19440799 atggcgatcctaggttccttgagattgcctacagcctaggataggtggaactcactgagacatcatgtctcacctcaatcccttttattt 19440710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 415
Target Start/End: Complemental strand, 37489467 - 37489369
Alignment:
Q  317 ttagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||||||  ||||||||  |||||| ||||||||||| |||| |||| |||||||||||||| | |||||||| ||| |||||||||||| ||||||||    
T  37489467 ttagaacggatggcgatcctaggtttcctgagattgcctacaacctaggataggtggaactcaccgagacatcttgtctcaccccaatcccttttattt 37489369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 326 - 415
Target Start/End: Original strand, 19359870 - 19359959
Alignment:
Q  326 atggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    ||||||||  ||||||||| |||||||| |||| |||| |||||||||||||| |||||||||  ||| |||||||||| ||||||||||    
T  19359870 atggcgatcctaggttccccgagattgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaattctttttattt 19359959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 312 - 415
Target Start/End: Complemental strand, 5938483 - 5938380
Alignment:
Q  312 tgagattagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatccttttt 411  Q
    |||| |||||||||||||||||  ||  |||||||| ||||| || | |||| |||||||||||||| |||||||||| | | |||||||||||| ||||    
T  5938483 tgagtttagaacatatggcgatcctaatttccctgaaattgcctatagcctaggataggtggaactcactgagacatcctatctcaccccaatccctttt 5938384  T
Q  412 attt 415  Q
    ||||    
T  5938383 attt 5938380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 415
Target Start/End: Original strand, 14521644 - 14521738
Alignment:
Q  321 aacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||| ||||||||  ||| ||||| |||||||| |||| |||| |||||||||||||| || ||||||  ||| |||||||||||||||||||||    
T  14521644 aacagatggcgatcttagattccccgagattgcctacagcctaggataggtggaactcactaagacattttgtctcaccccaatcctttttattt 14521738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 2746165 - 2746274
Alignment:
Q  24 ggattaggaataaattcagaaaacacatttaaagtttggaaatttatgcttgaaatt-gcttacgggtttgacatggatttttccaggataagctaaaac 122  Q
    |||||||||||  ||||||||||| | ||| ||| |||||| ||||||||  ||||| || |||||||||| | ||||||| |||   ||||||||||||    
T  2746165 ggattaggaatggattcagaaaacgcgtttgaaggttggaattttatgctgaaaatttgcctacgggtttggcttggatttgtccgaaataagctaaaac 2746264  T
Q  123 gtgaatttaa 132  Q
    ||||||||||    
T  2746265 gtgaatttaa 2746274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 410
Target Start/End: Complemental strand, 27170209 - 27170125
Alignment:
Q  326 atggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttt 410  Q
    |||| ||| |||||||||  |||||||| | || |||||||||| |||||||| |||||||||||||| ||||| ||||| ||||    
T  27170209 atggtgatcataggttcctagagattgccttcaacctatgatagatggaactcactgagacatcatgtctcacctcaatcatttt 27170125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 406
Target Start/End: Complemental strand, 7782922 - 7782837
Alignment:
Q  321 aacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcc 406  Q
    |||| |||| ||| |||||||||| |||||||| || | | || |||||||||||||| || ||||||| ||| |||||| |||||    
T  7782922 aacaaatggtgatcataggttccccgagattgcctatagcttaggataggtggaactcactaagacatcgtgtctcaccctaatcc 7782837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 317 - 412
Target Start/End: Original strand, 31347376 - 31347471
Alignment:
Q  317 ttagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatccttttta 412  Q
    |||||||||||||||||  ||||||| |||||||||| |||| |||| |||||||||||||| |||||||||| ||| ||||||||||||||||||    
T  31347376 ttagaacatatggcgatcctaggttctctgagattgcctacaacctaggataggtggaactcactgagacatcctgtctcaccccaatccttttta 31347471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 415
Target Start/End: Complemental strand, 31314743 - 31314640
Alignment:
Q  312 tgagattagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatccttttt 411  Q
    ||||||||||||| ||||||||  |||||||||||||||||| |||| |||| |||||||||||||| |||| ||||||||| ||||||| |||  ||||    
T  31314743 tgagattagaacagatggcgatcctaggttccctgagattgcctacaacctaggataggtggaactcactgaaacatcatgtctcaccccgatctctttt 31314644  T
Q  412 attt 415  Q
    ||||    
T  31314643 attt 31314640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 67 - 172
Target Start/End: Original strand, 3811479 - 3811584
Alignment:
Q  67 ttatgcttgaaattgcttacgggtttgacatggatttttccaggataagctaaaacgtgaatttaagatggttataaatgattccaggattgattatgga 166  Q
    |||||||  |||| ||||||| |||||||||||| |||| |   ||||||||||||| || |||||| |||||||||||||||||||  |||||||||||    
T  3811479 ttatgctgaaaatggcttacgagtttgacatggactttttcgaaataagctaaaacgagattttaagttggttataaatgattccagagttgattatgga 3811578  T
Q  167 tgccca 172  Q
    ||||||    
T  3811579 tgccca 3811584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 20112558 - 20112445
Alignment:
Q  22 tcggattaggaataaattcagaaaacacatttaaagtttggaaatttatgcttgaaattgcttacgggtttgacatggatttttccaggataagctaaaa 121  Q
    ||||||||| |||| ||||||||||| | |||||||||||||  ||  ||||  ||| |||||||||||||| ||||||||||||| | |||||||||||    
T  20112558 tcggattagaaatagattcagaaaacgcgtttaaagtttggattttggtgctgaaaactgcttacgggtttggcatggatttttccggaataagctaaaa 20112459  T
Q  122 cgtgaatttaagat 135  Q
     |||| ||||||||    
T  20112458 agtgagtttaagat 20112445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 410
Target Start/End: Complemental strand, 38211436 - 38211348
Alignment:
Q  322 acatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttt 410  Q
    |||||||||||| ||||| ||||  ||||||| |||| | || |||||||||||||| |||||| ||| ||| ||||||||||||||||    
T  38211436 acatatggcgatcataggctccccaagattgcctacaacttaggataggtggaactcactgagagatcctgtctcaccccaatcctttt 38211348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 402
Target Start/End: Complemental strand, 17863309 - 17863237
Alignment:
Q  330 cgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcacccca 402  Q
    |||| |||||||||| |||||||| || | ||||  ||||||||||||| |||||||||||||| ||||||||    
T  17863309 cgatcataggttccccgagattgcatataacctagaataggtggaactcactgagacatcatgtctcacccca 17863237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 385
Target Start/End: Complemental strand, 29742371 - 29742307
Alignment:
Q  321 aacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgaga 385  Q
    |||| |||||||| ||||||||||||||||||| |||| ||||  ||||||||||||| ||||||    
T  29742371 aacagatggcgatcataggttccctgagattgcctacaacctaaaataggtggaactcactgaga 29742307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 18010992 - 18010915
Alignment:
Q  328 ggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcc 406  Q
    |||||||||| ||| || |||||||| | || |||| |||||||||||||| |||||||||| ||| ||||||||||||    
T  18010992 ggcgattataagttgcc-gagattgcctgcagcctaggataggtggaactcactgagacatcctgtctcaccccaatcc 18010915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 406
Target Start/End: Complemental strand, 29747229 - 29747149
Alignment:
Q  326 atggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcc 406  Q
    |||| ||| |||| ||||| ||||| || |||| |||| |||| ||||||||| |||||||||| ||| ||||||||||||    
T  29747229 atggtgatcatagattccccgagatcgcctacaacctaggatatgtggaactcactgagacatcctgtctcaccccaatcc 29747149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 27085418 - 27085368
Alignment:
Q  360 cctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttt 410  Q
    ||||||||| ||||||||| || |||||| |||| ||||||||||||||||    
T  27085418 cctatgatatgtggaactcactaagacattatgtttcaccccaatcctttt 27085368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 33125425 - 33125466
Alignment:
Q  365 gataggtggaactcgctgagacatcatgtgtcaccccaatcc 406  Q
    |||||||||||||| || ||||||||||| ||||||||||||    
T  33125425 gataggtggaactcactaagacatcatgtctcaccccaatcc 33125466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 415
Target Start/End: Complemental strand, 89938 - 89835
Alignment:
Q  312 tgagattagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatccttttt 411  Q
    |||| |||||||||||||||||  ||||||||||| |||||| |||| |||| |||||||||||||| |||||||||| ||| |||| ||||||| ||||    
T  89938 tgagtttagaacatatggcgatcctaggttccctgtgattgcctacagcctaggataggtggaactcactgagacatcttgtctcactccaatccctttt 89839  T
Q  412 attt 415  Q
    ||||    
T  89838 attt 89835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 415
Target Start/End: Original strand, 5131326 - 5131429
Alignment:
Q  312 tgagattagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatccttttt 411  Q
    |||| |||||||| ||||||||  ||||||||| |||||||| |||| |||| |||||||||||||| |||||||||| ||| |||||||||||| ||||    
T  5131326 tgagtttagaacagatggcgatcctaggttccccgagattgcctacaacctaggataggtggaactcactgagacatcttgtctcaccccaatccctttt 5131425  T
Q  412 attt 415  Q
    ||||    
T  5131426 attt 5131429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 415
Target Start/End: Original strand, 31113617 - 31113720
Alignment:
Q  312 tgagattagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatccttttt 411  Q
    |||| ||||||||||||  |||  |||||||| ||||||||| |||| |||| |||||||||||||| |||||||||||||| |||||||||||| ||||    
T  31113617 tgagtttagaacatatgttgatcctaggttccttgagattgcctacagcctaggataggtggaactcactgagacatcatgtctcaccccaatccctttt 31113716  T
Q  412 attt 415  Q
    ||||    
T  31113717 attt 31113720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 5130226 - 5130337
Alignment:
Q  22 tcggattaggaataaattcagaaaacacatttaaagtttggaaatttatgcttgaaattgcttacgggtttgacatggatttttccaggataagctaaaa 121  Q
    |||||||| ||||  | ||||| ||| ||||||||||||| ||| || ||||  || || |||||||||||||||| |||||||||   |||||||||||    
T  5130226 tcggattaagaatggactcagagaacgcatttaaagtttgtaaaattctgctgaaatttacttacgggtttgacatagatttttccgaaataagctaaaa 5130325  T
Q  122 cgtgaatttaag 133  Q
    ||||||| ||||    
T  5130326 cgtgaatctaag 5130337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 415
Target Start/End: Original strand, 33301138 - 33301217
Alignment:
Q  336 taggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||||||||  || |||| |||| |||| ||||| |||||||| |||||||||| ||| |||||||||||||||||||||    
T  33301138 taggttcccccaggttgcctacaacctaggatagatggaactcactgagacatcttgtctcaccccaatcctttttattt 33301217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 321 - 415
Target Start/End: Complemental strand, 28144478 - 28144384
Alignment:
Q  321 aacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||| ||||||||  ||||||||| |||||||| ||||  |||  ||||||||||||| |||||||||  ||| ||| |||||||||||||||||    
T  28144478 aacagatggcgatcctaggttccccgagattgcctacagtctagtataggtggaactcactgagacattttgtctcagcccaatcctttttattt 28144384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 321 - 415
Target Start/End: Original strand, 34256188 - 34256282
Alignment:
Q  321 aacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||| ||||||||  ||| ||||| |||||||| |||| |||| |||||||||||||| ||||| |||  ||| |||||||||| ||||||||||    
T  34256188 aacagatggcgatcctagattccccgagattgcctacagcctaggataggtggaactcactgaggcattttgtctcaccccaattctttttattt 34256282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 416
Target Start/End: Complemental strand, 6406292 - 6406200
Alignment:
Q  317 ttagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttatttt 416  Q
    |||||||||||| ||||  ||||||||| ||||||||       ||| |||||||| ||||| |||||||||||||| |||||||||||| |||||||||    
T  6406292 ttagaacatatgacgatcctaggttccccgagattgc-------ctaggataggtgcaactcactgagacatcatgtctcaccccaatcccttttatttt 6406200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 415
Target Start/End: Complemental strand, 8519351 - 8519272
Alignment:
Q  336 taggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    ||||||||  |||||||| |||| |||| |||||||| ||||| || ||||||  ||| ||||| |||||||||||||||    
T  8519351 taggttcctagagattgcctacaacctaagataggtgaaactcacttagacattttgtctcacctcaatcctttttattt 8519272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 415
Target Start/End: Complemental strand, 51844041 - 51843938
Alignment:
Q  312 tgagattagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatccttttt 411  Q
    |||| |||||||||||| ||||  |||| ||||||||||||| |||||| || |||||||||||||| |||||||||||||| ||||||||||  |||||    
T  51844041 tgagtttagaacatatgacgatcttagggtccctgagattgcctacaccttaagataggtggaactcactgagacatcatgtctcaccccaattattttt 51843942  T
Q  412 attt 415  Q
    ||||    
T  51843941 attt 51843938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 317 - 415
Target Start/End: Complemental strand, 15088354 - 15088256
Alignment:
Q  317 ttagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||||||| ||||||||  ||||||||||| |||||| |||| |||| |||||||||||||| |||||||||| ||| |||||||||||| ||||||||    
T  15088354 ttagaacagatggcgatcctaggttccctgcgattgcctacaacctaggataggtggaactcactgagacatcctgtctcaccccaatcccttttattt 15088256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 317 - 415
Target Start/End: Complemental strand, 22210962 - 22210864
Alignment:
Q  317 ttagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||||||| ||||||||  ||||||||||| |||||| |||| |||| |||||||||||||| |||||||||| ||| |||||||||||| ||||||||    
T  22210962 ttagaacagatggcgatcctaggttccctgcgattgcctacaacctaggataggtggaactcactgagacatcctgtctcaccccaatcccttttattt 22210864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 330 - 417
Target Start/End: Original strand, 1991595 - 1991682
Alignment:
Q  330 cgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattttt 417  Q
    |||| ||||||| || |||||||| |||| | ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||    
T  1991595 cgatcataggtttcccgagattgcgtacaacttatgataggtggaactcactgagacatcatgcgtcaccccaatcccttttattttt 1991682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 317 - 415
Target Start/End: Complemental strand, 22219712 - 22219614
Alignment:
Q  317 ttagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||||||| ||||||||  ||||||||||| |||||| |||| |||| |||||||| ||||| |||||||||| ||| |||||||||||| ||||||||    
T  22219712 ttagaacagatggcgatcctaggttccctgcgattgcctacaacctaggataggtgcaactcactgagacatcctgtctcaccccaatcccttttattt 22219614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 326 - 410
Target Start/End: Original strand, 14150123 - 14150207
Alignment:
Q  326 atggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttt 410  Q
    ||||||||||||||||||| |||||||| ||||   || |||||||||||||| | |||||||||||| ||||||||||||||||    
T  14150123 atggcgattataggttccccgagattgcctacagtttaggataggtggaactcaccgagacatcatgtctcaccccaatcctttt 14150207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 312 - 415
Target Start/End: Complemental strand, 7899088 - 7898985
Alignment:
Q  312 tgagattagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatccttttt 411  Q
    |||| |||||||| ||| ||||  |||||||| ||||||||| ||||  ||| |||||||||||||| |||||||||| ||| |||||||||||| ||||    
T  7899088 tgagtttagaacaaatgtcgatcctaggttccttgagattgcctacaatctaggataggtggaactcactgagacatcttgtctcaccccaatccctttt 7898989  T
Q  412 attt 415  Q
    ||||    
T  7898988 attt 7898985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 415
Target Start/End: Original strand, 14115539 - 14115633
Alignment:
Q  321 aacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||| |||||||| ||||||| || ||| |||||| || |||| |||||||||||| |||||||||||| ||| |||||||||||| ||||||||    
T  14115539 aacaaatggcgatcataggtttcccgaggttgcttgcagcctaggataggtggaacgcgctgagacatcttgtctcaccccaatcccttttattt 14115633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 415
Target Start/End: Complemental strand, 22207399 - 22207301
Alignment:
Q  317 ttagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||||| | ||||||||  |||||||||||  ||||| |||| |||| |||||||||||||| |||||||||| ||| |||||||||||| ||||||||    
T  22207399 ttagaatagatggcgatcttaggttccctgcaattgcctacaacctaggataggtggaactcactgagacatcctgtctcaccccaatcccttttattt 22207301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 417
Target Start/End: Original strand, 44193448 - 44193553
Alignment:
Q  312 tgagattagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatccttttt 411  Q
    |||| |||||| | ||||||||  |||||||| ||||||||| |||| |||| |||||||||||||| | |||||||   || |||||||||||| ||||    
T  44193448 tgagtttagaatagatggcgatcctaggttccttgagattgcctacaacctaggataggtggaactcaccgagacatttcgtctcaccccaatccctttt 44193547  T
Q  412 attttt 417  Q
    ||||||    
T  44193548 attttt 44193553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 7064092 - 7064029
Alignment:
Q  347 agattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttt 410  Q
    ||||||| |||| |||| |||||||||||||| ||||||||| |||| |||||| |||||||||    
T  7064092 agattgcctacaacctaggataggtggaactcactgagacattatgtctcaccctaatcctttt 7064029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 415
Target Start/End: Complemental strand, 25336223 - 25336120
Alignment:
Q  312 tgagattagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatccttttt 411  Q
    |||| |||||||||||||||||  |||||||||||||||||| || | |||| |||||||||||||| ||| |||||| ||| |||||||||| | ||||    
T  25336223 tgagtttagaacatatggcgatcctaggttccctgagattgcctatagcctaggataggtggaactcactgggacatcctgtctcaccccaattcctttt 25336124  T
Q  412 attt 415  Q
    ||||    
T  25336123 attt 25336120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 182
Target Start/End: Original strand, 20809708 - 20809851
Alignment:
Q  37 attcagaaaacacatttaaagtttggaaatttatgcttgaaattgcttacgggtttgacatggatttttccaggataagctaaaacgtgaatttaagatg 136  Q
    ||||||||||| ||||||||||||||||||| || ||  |||| || |||||||||||  |||||||||||   |||||||| || ||||||| ||  ||    
T  20809708 attcagaaaacgcatttaaagtttggaaattcatactgcaaatggc-tacgggtttgatgtggatttttccgaaataagctacaatgtgaattcaaattg 20809806  T
Q  137 gttataaatgattccaggattgattatggatgcccacatggttgag 182  Q
    ||||||||||||| |||| || |||| |||||||| ||||||||||    
T  20809807 gttataaatgatttcagg-ttaattacggatgccctcatggttgag 20809851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 326 - 415
Target Start/End: Complemental strand, 5557208 - 5557119
Alignment:
Q  326 atggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    ||||||||  ||||||||| |||||||| |||| |||| |||||||||||||| |||||||||  ||| |||||||||| ||||||||||    
T  5557208 atggcgatcctaggttccccgagattgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaattctttttattt 5557119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 415
Target Start/End: Original strand, 20811015 - 20811109
Alignment:
Q  321 aacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||| ||||||||  ||||||| |||||||||| |||| |||| |||||||||||||| |||||||||  ||| |||||||||||| ||| ||||    
T  20811015 aacagatggcgatcctaggttcactgagattgcctacaacctaggataggtggaactcactgagacattctgtctcaccccaatccctttcattt 20811109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 415
Target Start/End: Original strand, 3166424 - 3166512
Alignment:
Q  327 tggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||||||  |||||||||||||||||| |||| |||| ||||| ||||||||   |||||||||||| |||||||||||  ||||||||    
T  3166424 tggcgatcctaggttccctgagattgcctacaacctaggatagatggaactcatcgagacatcatgtctcaccccaatcacttttattt 3166512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 406
Target Start/End: Original strand, 4844424 - 4844504
Alignment:
Q  326 atggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcc 406  Q
    ||||||||  |||||||||||||||||| |||| |||| |||||||||||||| ||| | |||| ||| ||||||||||||    
T  4844424 atggcgatcctaggttccctgagattgcctacaacctaggataggtggaactcactgcggcatcctgtctcaccccaatcc 4844504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 424
Target Start/End: Original strand, 25004005 - 25004088
Alignment:
Q  340 ttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttatttttatctcag 424  Q
    |||||||||||||| |||| |||| |||||||||||||| |||||||||  ||| ||||||||||||  ||||||||||| ||||    
T  25004005 ttccctgagattgcctacagcctaggataggtggaactcactgagacattctgtctcaccccaatcc-ctttatttttatttcag 25004088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 321 - 415
Target Start/End: Complemental strand, 19802337 - 19802243
Alignment:
Q  321 aacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||| ||||||||  ||||||||| |||||||| |||| |||| |||||||||||||| |||||||||  ||| |||||||||||||||||||||    
T  19802337 aacagatggcgatcgtaggttccccgagattgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaatcctttttattt 19802243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 415
Target Start/End: Original strand, 21959205 - 21959299
Alignment:
Q  321 aacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||| ||||||||  ||||||||| |||||||| |||| |||| |||||||||||||| |||||||||  ||| |||||||||||| ||||||||    
T  21959205 aacaaatggcgatcctaggttccccgagattgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaatccattttattt 21959299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 415
Target Start/End: Original strand, 42786498 - 42786592
Alignment:
Q  321 aacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||| ||||||||  ||||||||| ||| |||| || | |||| |||||||||||||| |||||||||| ||| |||||||||||| ||||||||    
T  42786498 aacagatggcgatcctaggttccccgaggttgcctatagcctaggataggtggaactcactgagacatcttgtctcaccccaatcccttttattt 42786592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 415
Target Start/End: Complemental strand, 48477488 - 48477394
Alignment:
Q  321 aacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||| ||||||||  ||||||||| ||| |||| || | |||| |||||||||||||| |||||||||| ||| |||||||||||| ||||||||    
T  48477488 aacagatggcgatcctaggttccccgaggttgcctatagcctaggataggtggaactcactgagacatcttgtctcaccccaatcccttttattt 48477394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 424
Target Start/End: Original strand, 3737876 - 3737960
Alignment:
Q  339 gttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttatttttatctcag 424  Q
    |||||||||||| || |||| ||||  ||||||||||||| |||||||||||||| ||||||||||||  ||||||||||| ||||    
T  3737876 gttccctgagatcgcctacaacctagaataggtggaactcactgagacatcatgtctcaccccaatcc-ctttatttttatttcag 3737960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 414
Target Start/End: Original strand, 3079019 - 3079116
Alignment:
Q  317 ttagaacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttatt 414  Q
    |||||||| ||||||||  ||||||||||| |||| | |||  |||| ||||||||||||||  ||||||||| ||| ||| |||||||| |||||||    
T  3079019 ttagaacagatggcgatcctaggttccctgcgatttcctactacctaggataggtggaactcattgagacatcctgtctcagcccaatcccttttatt 3079116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 409
Target Start/End: Original strand, 20920353 - 20920422
Alignment:
Q  340 ttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatccttt 409  Q
    ||||| |||||||| |||| |||| |||||||||||||| |||||||||||||  ||| |||||||||||    
T  20920353 ttccccgagattgcctacaacctaggataggtggaactcactgagacatcatgcctcatcccaatccttt 20920422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 415
Target Start/End: Complemental strand, 4340618 - 4340539
Alignment:
Q  336 taggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||||| || ||| |||| |||| |||| |||||||||||||| |||||||||  ||| ||||||||||| |||||||||    
T  4340618 taggtttcccgaggttgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaatcatttttattt 4340539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 415
Target Start/End: Original strand, 1 - 80
Alignment:
Q  336 taggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    ||||||||| |||||||| |||| |||| |||||||||||||| |||||||||  ||| |||||||||||||||||||||    
T  1 taggttccccgagattgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaatcctttttattt 80  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 415
Target Start/End: Original strand, 37442 - 37536
Alignment:
Q  321 aacatatggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    |||| ||||||||| ||||||||| |||||||  |||| |||| |||||||||||||   ||||||||  ||| |||||| ||| ||||||||||    
T  37442 aacagatggcgattgtaggttccccgagattgtctacagcctaggataggtggaactaaatgagacattttgtctcaccctaattctttttattt 37536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 326 - 415
Target Start/End: Complemental strand, 41527962 - 41527873
Alignment:
Q  326 atggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    ||||||||  ||||||||| |||||||| |||| |||| |||||||||||||| |||||||||  ||| |||||||||| ||||||||||    
T  41527962 atggcgatcctaggttccccgagattgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaattctttttattt 41527873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 410
Target Start/End: Complemental strand, 22301967 - 22301883
Alignment:
Q  326 atggcgattataggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttt 410  Q
    |||||||| |||||||||| |  ||||| |||| | || |||||||||||||| || ||||||||||| ||| ||||||||||||    
T  22301967 atggcgatcataggttccccgcaattgcctacaacttaggataggtggaactcactaagacatcatgtctcatcccaatcctttt 22301883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 416
Target Start/End: Original strand, 26075651 - 26075731
Alignment:
Q  336 taggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttatttt 416  Q
    ||||||| | |||||||| |||| | || ||| |||||||||| |||| ||||| ||| |||||||||||| |||||||||    
T  26075651 taggttctccgagattgcctacaacataggattggtggaactcactgatacatcctgtctcaccccaatcccttttatttt 26075731  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 401
Target Start/End: Complemental strand, 23213713 - 23213637
Alignment:
Q  326 atggcgattataggtt-ccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcacccc 401  Q
    |||||||| ||||||| ||| |||||||| || | |||| |||||||||||||| || |||||| |||| |||||||    
T  23213713 atggcgatcataggtttccccgagattgcctaaaacctaggataggtggaactcactaagacataatgtctcacccc 23213637  T

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Target: scaffold0043 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 415
Target Start/End: Original strand, 70138 - 70217
Alignment:
Q  336 taggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    ||||| |||||||||||| | || |||| |||||||||||||| |||||||||| ||| |||||| ||||| ||||||||    
T  70138 taggtaccctgagattgcctgcatcctaggataggtggaactcactgagacatcttgtctcacccgaatcccttttattt 70217  T

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Target: scaffold0043; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 69120 - 69229
Alignment:
Q  24 ggattaggaataaattcagaaaacacatttaaagtttggaaatttatgcttgaaatt-gcttacgggtttgacatggatttttccaggataagctaaaac 122  Q
    |||||||||||  ||||||||||| | ||| ||| |||||| ||||||||  ||||| || |||||||||| | ||||||| |||   ||||||||||||    
T  69120 ggattaggaatggattcagaaaacgcgtttgaaggttggaattttatgctgaaaatttgcctacgggtttggcttggatttgtccgaaataagctaaaac 69219  T
Q  123 gtgaatttaa 132  Q
    ||||||||||    
T  69220 gtgaatttaa 69229  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 416
Target Start/End: Complemental strand, 63542 - 63462
Alignment:
Q  336 taggttccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttatttt 416  Q
    ||||||||| ||||| || |||| | || |||||||||||||| |||||||||| |||  ||||||||||  |||||||||    
T  63542 taggttccccgagatagcatacaacttaggataggtggaactcactgagacatcctgtcacaccccaatctcttttatttt 63462  T

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Target: scaffold0060 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 415
Target Start/End: Original strand, 45204 - 45278
Alignment:
Q  341 tccctgagattgcttacaccctatgataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattt 415  Q
    ||||||||||||| |||| |||| | || ||||||||| || ||||||  ||| |||||||||||| ||||||||    
T  45204 tccctgagattgcctacaacctagggtatgtggaactcactaagacattttgtctcaccccaatcccttttattt 45278  T

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