View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12536_low_7 (Length: 409)
Name: NF12536_low_7
Description: NF12536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12536_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 398
Target Start/End: Original strand, 2144463 - 2144840
Alignment:
| Q |
17 |
cactaataactcaaaactatataaagccaaaataagtgttataagcataggtttctaccatatatatcagggtttgtatagtttgtcttaaaccaaattg |
116 |
Q |
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| T |
2144463 |
cactaataactcaaaactatataaagccaaaataagtgttttaagcataggtttctaccatat----cagggtttgcatattttgtcttaaaccaaattg |
2144558 |
T |
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| Q |
117 |
aactagatgatcacaacctctttaactaggccattcataccttgatcgaaatagagccatattagttaggtgtttttgtcaaaggacacgacatatgggt |
216 |
Q |
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| T |
2144559 |
aactagatgatcacaacctctttaactaggccattcataccttgatcgaaatagagccatattagttaggtgtctttgtcaaaggacacgacgtatgggt |
2144658 |
T |
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| Q |
217 |
cataaagttcaaacatggatctaatgtatggtccaattctaatagcatatagtatatagatttgtggctacacatactctcgtgagaaactatgttaaga |
316 |
Q |
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| T |
2144659 |
cataaagttctaacatggatctaatgtatggtccaattctaatagcatatagtatatagatttgtggctacacatactctcgtgagaaactatgttaaaa |
2144758 |
T |
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| Q |
317 |
ggcacgtaggtagaagctgtatacatacacctaaataatttactcttgttaatttaatgtaggtaaccttttttcttctctc |
398 |
Q |
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| T |
2144759 |
ggcacgtaggtagaagctgtatacatacacctaaacaatttactcttgttaatttaatgtaggtaaccttttttcttctctc |
2144840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 2139335 - 2139411
Alignment:
| Q |
230 |
catggatctaatgtatggtccaattctaatagcatatagtatatagatttgtggctacacatactctcgtgagaaacta |
308 |
Q |
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| T |
2139335 |
catggatctaatgtatggtccaattctaatagc--atagtatatagattaagggcaacacatactcttatgagaaacta |
2139411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 2139228 - 2139319
Alignment:
| Q |
106 |
aaaccaaattgaactagatgatcacaacctctttaactaggccattcataccttgatcgaaatagagccatattagttaggtgtttttgtcaaaggaca |
204 |
Q |
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|||||||||||||||||| | |||||||||||||||||| || ||||||||||| |||||| | ||| | |||||| | ||||||||||||||| |
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| T |
2139228 |
aaaccaaattgaactagagggtcacaacctctttaactaagc----cataccttgattgaaatataacca---ttgttaggagcttttgtcaaaggaca |
2139319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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