View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12536_low_9 (Length: 373)
Name: NF12536_low_9
Description: NF12536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12536_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 355
Target Start/End: Complemental strand, 54289951 - 54289605
Alignment:
| Q |
11 |
cacagacactgcagtatattgaatagtacctgtcctgtcactgtatacagtctgttataccagccatttgttaacatcccaatagctgaatatagatgtt |
110 |
Q |
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| T |
54289951 |
cacagacactgcagtatattgaatagtacctgtcctgtcactgtatacagtctgttataccagccatttgttaacatcccaatagctgaatatagatgtt |
54289852 |
T |
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| Q |
111 |
tgcgaccctcaccaggactttgcagcgtatactcaatgaaataaaatcctgagccgttttttcgaggcaaactagcagttagaacttcaaaattcaaccc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54289851 |
tgcgaccctcaccaggactttgcagcgtatactcaatgaaataaaatcctgagccgttttttcgaggcaaactagcagttagaacttcaaaattcaaccc |
54289752 |
T |
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| Q |
211 |
ataatttcagttttgagaagtctttcactgtctcaataata--atacattagaactatatgtaacctataacatattttctttcccttacagttgcaacc |
308 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54289751 |
ataatttcagttttgagaagtctttcactgtctcattaataatatacattagaactatatgtaacctataacatattttctttcccttacagttgcaacc |
54289652 |
T |
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| Q |
309 |
ttataacatgtactgtaatgtaatgcagcagctttcaatgacattta |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54289651 |
ttataacatgtactgtaatgtaatgcagcagctttcaatgacattta |
54289605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 26 - 355
Target Start/End: Original strand, 11684338 - 11684667
Alignment:
| Q |
26 |
atattgaatagtacctgtcctgtcactgtatacagtctgttataccagccatttgttaacatcccaatagctgaatatagatgtttgcgaccctcaccag |
125 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11684338 |
atatcgaatagtacctgtcctgtcgctgtatacagtctgttataccaaccatctgttaacatcccaatagctgaatatagatgtttgcgaccctcaccag |
11684437 |
T |
|
| Q |
126 |
gactttgcagcgtatactcaatgaaataaaatcctgagccgttttttcgaggcaaactagcagttagaacttcaaaattcaacccataatttcagttttg |
225 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| || | ||||||| ||||||||||| ||||||||||||||||| |
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| T |
11684438 |
gactttgcagcgtatactcaataaaataaaatcctgaaccgttttttggaggcaaattaataattagaacgtcaaaattcaatccataatttcagttttg |
11684537 |
T |
|
| Q |
226 |
agaagtctttcactgtctcaataataatacattagaactatatgtaacctataacatattttctttcccttacagttgcaaccttataacatgtactgta |
325 |
Q |
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|||||||| || |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
11684538 |
agaagtctctctctgtctcattaagcatacattagaactatatataacctataacatattttctttcccttatagttgcaaccttataacatgtactgca |
11684637 |
T |
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| Q |
326 |
atgtaatgcagcagctttcaatgacattta |
355 |
Q |
| |
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| |||||||||| |||||||||||||||| |
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| T |
11684638 |
aaataatgcagcaactttcaatgacattta |
11684667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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