View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12537_high_1 (Length: 295)
Name: NF12537_high_1
Description: NF12537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12537_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 1815658 - 1815780
Alignment:
| Q |
24 |
ctctcctcctccgccaccgcagcttctccaccacaggtctctacggcatccctcatttgaaatccccaaaaggattccaacctttcgtagatgaagccat |
123 |
Q |
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| T |
1815658 |
ctctcctcctccgccaccgcagcttctccaccacaggtctctacggcatccctcatttgaaatccccaaaaggattccaacctttcgtagatgaagccat |
1815757 |
T |
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| Q |
124 |
tcaacggtatcaaattcaatcca |
146 |
Q |
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| T |
1815758 |
tcaacggtatcaaattcaatcca |
1815780 |
T |
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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 214 - 277
Target Start/End: Original strand, 1815843 - 1815906
Alignment:
| Q |
214 |
caggtctggagaacttgttaattacatttcttccaagccatctgcttccgaactcatgcgagca |
277 |
Q |
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| T |
1815843 |
caggtctggagaacttgttaattacatttcttccaagccgtctgcttccgaactcatgcgagca |
1815906 |
T |
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