View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12537_high_2 (Length: 287)
Name: NF12537_high_2
Description: NF12537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12537_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 42511301 - 42511571
Alignment:
| Q |
7 |
ggagcagagaggattgagcataatcaatagatcgctcgtagaccttgttttaagtttggctaaaaagtcaaaatacatattacctctcatacattatgat |
106 |
Q |
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||||| || |||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42511301 |
ggagccgaaaggattgagcataatcaacagatcactcgtagaccttgttccaagtttggctaaaaagtcaaaatacatattacctctcatacattatgat |
42511400 |
T |
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| Q |
107 |
ataatagctat-----ctcatttccattccgtatctcatacattcaactactataaaatgtttaataagttatgaaacatttcatatggggagataaaga |
201 |
Q |
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||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42511401 |
ataatagctattacctctcatttgcattcggtatctcatacattcaactactataaaatgtttaatcagttatgaaacatttcatatggggagataaaga |
42511500 |
T |
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| Q |
202 |
agaggcccagtagctgcaaggttgtgacagtgggtgaaaagaaggtttccatc-aataatatacaaaaatt |
271 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42511501 |
agaggcccagcagctgcaaggttgtgacagtgggtgaaaagaaggtttccatcaaataatatacaaaaatt |
42511571 |
T |
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