View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12537_low_1 (Length: 371)
Name: NF12537_low_1
Description: NF12537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12537_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 23)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 39152264 - 39151905
Alignment:
| Q |
1 |
ttctctttagactcaagttccttaatccggctttcaaaatgcttctgtttggataccaaatcattcaccagctcctttacttggctttcaaattccttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39152264 |
ttctctttagactcaagttccttaatccggctttcaaaatgcttctgtttggataccaaatcattcaccagctcctttacttggctttcaaattccttct |
39152165 |
T |
|
| Q |
101 |
gttttgaaatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgccc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39152164 |
gttttgaaatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgccc |
39152065 |
T |
|
| Q |
201 |
ttcctttgctacaaaatccttgacacattcatcaattttcccctgcattttcttgcaagcttcgttaattcttccaacacaggtaatttcctttttctta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39152064 |
ttcctttgctacaaaatccttgacacattcatcaattttcccctgcattttcttgcaagcttcgttaattcttccaacacaggtaatttcctttttctta |
39151965 |
T |
|
| Q |
301 |
ttttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctct |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39151964 |
ttttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctct |
39151905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 2 - 360
Target Start/End: Complemental strand, 39136646 - 39136288
Alignment:
| Q |
2 |
tctctttagactcaagttccttaatccggctttcaaaatgcttctgtttggataccaaatcattcaccagctcctttacttggctttcaaattccttctg |
101 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| || |
|
|
| T |
39136646 |
tctctttcgactcaagctccttaatatggctttcgaaatgcttctgttttgataccaaatcattcaccagctccttcacttggctttccaattccttttg |
39136547 |
T |
|
| Q |
102 |
ttttgaaatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgccct |
201 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39136546 |
ttttgaaatgttatccatgacttgacgaagttccaactcttttgtctttagttctttcttgtgctctccaatcaagtcctccatcaaaccgagctgccct |
39136447 |
T |
|
| Q |
202 |
tcctttgctacaaaatccttgacacattcatcaattttcccctgcattttcttgcaagcttcgttaattcttccaacacaggtaatttcctttttcttat |
301 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
39136446 |
tcctttgctacaaaatccttgacacattcgtcaatttttccctgcattttcttgcgagcttcgataattcttccaacatccctaatttcctttttcttat |
39136347 |
T |
|
| Q |
302 |
tttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctct |
360 |
Q |
| |
|
||||||| |||| | ||| |||||||||| ||||||||| ||||||| |||| ||||| |
|
|
| T |
39136346 |
tttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctct |
39136288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 28 - 355
Target Start/End: Original strand, 39474010 - 39474337
Alignment:
| Q |
28 |
cggctttcaaaatgcttctgtttggataccaaatcattcaccagctcctttacttggctttcaaattccttctgttttgaaatgttatccatgacttcac |
127 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39474010 |
cggctttcaaaatgcttctgttttgataccaaatcattcactagctccttcacttggctttcaaattccttctgttttgaaatgttatccatgacttgac |
39474109 |
T |
|
| Q |
128 |
gaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgcccttcctttgctacaaaatccttgacaca |
227 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||| |||||| ||||||| |||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
39474110 |
aaagttccatatcttttgtgttgagttcttgcttgcgctcttgaatcaattcctccaccaaatagagctgtccatcctttgctacaaaatccttgacaca |
39474209 |
T |
|
| Q |
228 |
ttcatcaattttcccctgcattttcttgcaagcttcgttaattcttccaacacaggtaatttcctttttcttattttcaagctctttggagcgttcctca |
327 |
Q |
| |
|
||| |||||||| ||||||||||||||| ||||||||| |||||||||||| |||||| ||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
39474210 |
ttcttcaatttttccctgcattttcttgtgagcttcgttcattcttccaacatgactaattttctttttcttattttcaagctcttcggagcactcctca |
39474309 |
T |
|
| Q |
328 |
atatttctctttattgactgcagtctct |
355 |
Q |
| |
|
|||| ||||||||| || |||| ||||| |
|
|
| T |
39474310 |
atatctctctttatggaatgcaatctct |
39474337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 32 - 354
Target Start/End: Original strand, 39487928 - 39488249
Alignment:
| Q |
32 |
tttcaaaatgcttctgtttggataccaaatcattcaccagctcctttacttggctttcaaattccttctgttttgaaatgttatccatgacttcacgaag |
131 |
Q |
| |
|
|||||||||| || ||| || ||| ||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39487928 |
tttcaaaatggttatgtctgaataacaaatcattcaccagctccttcatctggctttcaaatttcttctgttttgaaatgttatccatgacttcacgaag |
39488027 |
T |
|
| Q |
132 |
ttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgcccttcctttgctacaaaatccttgacacattca |
231 |
Q |
| |
|
|||| ||||||||| | ||||||||||||| || ||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
39488028 |
ttccgtctcttttgtatcgagttcttgcttgtgc-ctccaatcaagtcctccatcaaatatagctgtccttcctttgctacaaaatctttgacacattct |
39488126 |
T |
|
| Q |
232 |
tcaattttcccctgcattttcttgcaagcttcgttaattcttccaacacaggtaatttcctttttcttattttcaagctctttggagcgttcctcaatat |
331 |
Q |
| |
|
|||||||||||||||||||||| | | |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||| || |
|
|
| T |
39488127 |
tcaattttcccctgcattttctagtgaacttcgttaattcttccaacacaactaatttcctttttcttattttcaagctctttagagcactcctcaacat |
39488226 |
T |
|
| Q |
332 |
ttctctttattgactgcagtctc |
354 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
39488227 |
ctctctttatagactgcagtctc |
39488249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 39422195 - 39422554
Alignment:
| Q |
1 |
ttctctttagactcaagttccttaatccggctttcaaaatgcttctgtttggataccaaatcattcaccagctcctttacttggctttcaaattccttct |
100 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||| ||||||||||| ||||||||||||||| ||||||| | ||||| ||| |||||||||| |
|
|
| T |
39422195 |
ttctctttagactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaatcattctccagctcggccaattggccttccaattccttct |
39422294 |
T |
|
| Q |
101 |
gttttgaaatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgccc |
200 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| || |||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
39422295 |
gttttgaaatgtcatccatgactttacgaagttccagcttttttgtgttgagttcttgcttgcgctctccaatcaagttttccatcaaagagagctgtga |
39422394 |
T |
|
| Q |
201 |
ttcctttgctacaaaatccttgacacattcatcaattttcccctgcattttcttgcaagcttcgttaattcttccaacacaggtaatttcctttttctta |
300 |
Q |
| |
|
|||||||||||| || |||| ||||||||| |||||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
39422395 |
ttcctttgctacgaattcctcgacacattcttcaattttcccctgcattttcttgtatgcttccttaattcttccaacatcactaatttcctttttctta |
39422494 |
T |
|
| Q |
301 |
ttttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctct |
360 |
Q |
| |
|
||||| ||||||||| ||| | |||||||| ||||||||| ||||||| | |||||||| |
|
|
| T |
39422495 |
ttttccagctctttgcagcacttctcaatatctctctttatggactgcaatatcttctct |
39422554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 39416075 - 39416435
Alignment:
| Q |
1 |
ttctctttagactcaagttccttaatccggctttcaaaatgcttctgtttggataccaaatcattcaccagctcctttacttggctttcaaattccttct |
100 |
Q |
| |
|
||||| ||||||||||| ||||| || ||||||| ||||| | |||| ||||||||||||||| | |||||||| |||||||||||||||||||||| |
|
|
| T |
39416075 |
ttctcattagactcaagctccttcatgcggcttttgtaatgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaattccttct |
39416174 |
T |
|
| Q |
101 |
gttttgaaatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgccc |
200 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||| |||||||||||| || |
|
|
| T |
39416175 |
gttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtcc |
39416274 |
T |
|
| Q |
201 |
ttcctttgctacaaaatccttgacacattcatcaattttcccctgcattttcttgcaag---cttcgttaattcttccaacacaggtaatttcctttttc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||| |||||||||||||| || |||||||||||||||||||| | |||||||||||| | |
|
|
| T |
39416275 |
ttcctttgctacaaaatccttgacacattcttcagtttttacctgcattttcttgtgagcttcttcgttaattcttccaacataactaatttccttttgc |
39416374 |
T |
|
| Q |
298 |
ttattttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttct |
358 |
Q |
| |
|
||||||||||| ||| || ||| |||||||||| ||||||||| || |||| |||||||| |
|
|
| T |
39416375 |
ttattttcaagttctctgcagcactcctcaatatctctctttatggaatgcaatctcttct |
39416435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 73 - 360
Target Start/End: Complemental strand, 39458503 - 39458216
Alignment:
| Q |
73 |
tcctttacttggctttcaaattccttctgttttgaaatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaa |
172 |
Q |
| |
|
||||| ||||| |||||||| | |||||||||||||||||||||| |||||| | ||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39458503 |
tccttcacttgtctttcaaaatgcttctgttttgaaatgttatccttgacttgatgaagttctatctcttttgtcttgagttcttgcttgcgctctccaa |
39458404 |
T |
|
| Q |
173 |
tcaagtcctccatcaaatagagctgcccttcctttgctacaaaatccttgacacattcatcaattttcccctgcattttcttgcaagcttcgttaattct |
272 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||||| ||||||||| |||||||| |||||||| ||| |||||||||| |||||||| |||||| |
|
|
| T |
39458403 |
tcaagtcttccatcaaatagagttgtgcttcctttgctgcaaaatcctcgacacatttttcaattttggcctcgattttcttgcgagcttcgtcaattct |
39458304 |
T |
|
| Q |
273 |
tccaacacaggtaatttcctttttcttattttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctct |
360 |
Q |
| |
|
||||||| | || ||||||||||||| |||||||| |||||| ||| |||||||||| ||||||||| ||||||| |||||||||| |
|
|
| T |
39458303 |
tccaacataaatagtttcctttttcttgttttcaagatctttgcagcactcctcaatatctctctttatggactgcaatctcttctct |
39458216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 111 - 365
Target Start/End: Original strand, 39495359 - 39495613
Alignment:
| Q |
111 |
gttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgcccttcctttgct |
210 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||| |
|
|
| T |
39495359 |
gttatccatgactggacgaagttctgtttcttttgtcttgagttcttgcttgcgctctccaatcaagtcatccatcaaacagagctgtgcttgctttgct |
39495458 |
T |
|
| Q |
211 |
acaaaatccttgacacattcatcaattttcccctgcattttcttgcaagcttcgttaattcttccaacacaggtaatttcctttttcttattttcaagct |
310 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||||||||| | ||||||| || || ||||| | | ||||||||||| ||||| |||||| |
|
|
| T |
39495459 |
gcaaaatccttgacgcattcttcaattttttcctgcattttcttatgggattcgttagttatttcaacaaaactcatttccttttttatatttccaagct |
39495558 |
T |
|
| Q |
311 |
ctttggagcgttcctcaatatttctctttattgactgcagtctcttctctgcttc |
365 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| ||||||| ||||| |||| |||| |
|
|
| T |
39495559 |
ctttggagcgctcctcaatatctctctttatggactgcaatctctcctcttcttc |
39495613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 139 - 360
Target Start/End: Complemental strand, 39129711 - 39129490
Alignment:
| Q |
139 |
tcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgcccttcctttgctacaaaatccttgacacattcatcaattt |
238 |
Q |
| |
|
||||||||||| | ||||| || |||||| ||||||||| ||||||||| | || || ||| ||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
39129711 |
tcttttgtctttacttcttcgttccgctctgcaatcaagttgtccatcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattt |
39129612 |
T |
|
| Q |
239 |
tcccctgcattttcttgcaagcttcgttaattcttccaacacaggtaatttcctttttcttattttcaagctctttggagcgttcctcaatatttctctt |
338 |
Q |
| |
|
||||||| ||||||||| |||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
39129611 |
tcccctggattttcttgtgagcttccttaattcttccagcatcactaatttcctttttcatattttcaagctctttggagcactcctcaatatctctctt |
39129512 |
T |
|
| Q |
339 |
tattgactgcagtctcttctct |
360 |
Q |
| |
|
||| ||||||| |||||||||| |
|
|
| T |
39129511 |
tatggactgcaatctcttctct |
39129490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 96 - 359
Target Start/End: Complemental strand, 39215196 - 39214933
Alignment:
| Q |
96 |
cttctgttttgaaatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagc |
195 |
Q |
| |
|
||||| ||||||||||||| | |||||| | |||||| | ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39215196 |
cttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagc |
39215097 |
T |
|
| Q |
196 |
tgcccttcctttgctacaaaatccttgacacattcatcaattttcccctgcattttcttgcaagcttcgttaattcttccaacacaggtaatttcctttt |
295 |
Q |
| |
|
| ||||||||| ||||||||||||| | |||||| |||||||| ||||||||||||| ||| |||| |||||||| |||||| | | | | | |
|
|
| T |
39215096 |
ttcccttccttcactacaaaatccttaatacattcttcaatttttccctgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtct |
39214997 |
T |
|
| Q |
296 |
tcttattttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctc |
359 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| || ||||||||| ||||||| ||||||||| |
|
|
| T |
39214996 |
tcttattttcaagctctttacagcactcctcaacatatctctttatggactgcaatctcttctc |
39214933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 102 - 360
Target Start/End: Complemental strand, 39602256 - 39601998
Alignment:
| Q |
102 |
ttttgaaatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgccct |
201 |
Q |
| |
|
|||||||||||| || |||||| | |||||||| ||| || || ||||| ||| |||||||||||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
39602256 |
ttttgaaatgttgcccttgacttgattaagttccatctccttcgttttgagctctagcttgcgctctccaatcaagtcatccatgaaatagagttgccct |
39602157 |
T |
|
| Q |
202 |
tcctttgctacaaaatccttgacacattcatcaattttcccctgcattttcttgcaagcttcgttaattcttccaacacaggtaatttcctttttcttat |
301 |
Q |
| |
|
||||| ||||||||||||| | |||||| |||||||| ||||||||||||| ||||||| ||||| || || ||| |||||||||||||||||| |
|
|
| T |
39602156 |
tccttcactacaaaatccttaatacattcttcaatttttccctgcattttctcatgagcttcgaaaattcctctaaaacaactaatttcctttttcttat |
39602057 |
T |
|
| Q |
302 |
tttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctct |
360 |
Q |
| |
|
|||||||||||||| || |||| ||||| | ||||||| ||||||| ||| |||||| |
|
|
| T |
39602056 |
tttcaagctctttgcggcactcctgaatatctatctttatggactgcaatctattctct |
39601998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 108 - 337
Target Start/End: Complemental strand, 39123781 - 39123552
Alignment:
| Q |
108 |
aatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgcccttccttt |
207 |
Q |
| |
|
|||||||||||||| || || |||||| ||||||||||| ||||||| ||||||||||||||||| ||| ||||||||| |||| || ||| |||| |
|
|
| T |
39123781 |
aatgttatccatgatttgacaaagttctgtttcttttgtcttcagttctttcttgcgctctccaatcatgtcgtccatcaaagagagttgtgcttgcttt |
39123682 |
T |
|
| Q |
208 |
gctacaaaatccttgacacattcatcaattttcccctgcattttcttgcaagcttcgttaattcttccaacacaggtaatttcctttttcttattttcaa |
307 |
Q |
| |
|
| | ||||||||||||| |||| ||| |||| ||||||||||||||| || ||||| ||||||| ||||| | | |||||||||||| ||||||||| |
|
|
| T |
39123681 |
acaagaaaatccttgacaaattcttcagtttttccctgcattttcttgtgagattcgtaaattctttcaacataactcatttcctttttcatattttcaa |
39123582 |
T |
|
| Q |
308 |
gctctttggagcgttcctcaatatttctct |
337 |
Q |
| |
|
| |||||||||| ||||||||| ||||| |
|
|
| T |
39123581 |
gatctttggagcacccctcaatatctctct |
39123552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 55 - 253
Target Start/End: Complemental strand, 38792413 - 38792216
Alignment:
| Q |
55 |
accaaatcattcaccagctcctttacttggctttcaaattccttctgttttgaaatgttatccatgacttcacgaagttccaactcttttgtcttgagtt |
154 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || | ||||||||| ||||||| ||||||||||| | ||| ||| ||||||| ||| |||| |
|
|
| T |
38792413 |
accaaatcattcaccagctccttcacttggctttccaaatgcttctgttt-gaaatgtcatccatgacttgataaagctccttctcttttttctcaagtt |
38792315 |
T |
|
| Q |
155 |
cttgcttgcgctctccaatcaagtcctccatcaaatagagctgcccttcctttgctacaaaatccttgacacattcatcaattttcccctgcattttct |
253 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||| | |||| ||||||| || || ||||||| |||| || ||||| |||||||||||||||| |
|
|
| T |
38792314 |
cttgcctacgctctccaatcaagtcctccatcaaacatagctctacttccttcgcgactaaatcctcgacaatctcttcaatcttcccctgcattttct |
38792216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 102 - 356
Target Start/End: Complemental strand, 39450764 - 39450510
Alignment:
| Q |
102 |
ttttgaaatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgccct |
201 |
Q |
| |
|
|||||||||||| || |||||| | |||||| | |||||| | |||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39450764 |
ttttgaaatgttccccttgacttgattaagttctatctctttcgccttgagctctagcttgcgctctccaatcaagttttccatcaaatagagctgccct |
39450665 |
T |
|
| Q |
202 |
tcctttgctacaaaatccttgacacattcatcaattttcccctgcattttcttgcaagcttcgttaattcttccaacacaggtaatttcctttttcttat |
301 |
Q |
| |
|
|||||| | ||||| | ||||| ||| || ||||||| |||||| ||| | | | |||| | |||||||| |||||| ||| || ||||||||||| |
|
|
| T |
39450664 |
tcctttaccacaaactgcttgatacaatcgtcaatttcttcctgcactttgtcacgaacttcatcaattcttctaacacaactaacttgctttttcttat |
39450565 |
T |
|
| Q |
302 |
tttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctctt |
356 |
Q |
| |
|
||| |||||||||| ||| |||||||||| | |||| || ||||||| |||||| |
|
|
| T |
39450564 |
tttgaagctctttgcagcagtcctcaatatctgtcttgatggactgcaatctctt |
39450510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 108 - 255
Target Start/End: Original strand, 39427504 - 39427651
Alignment:
| Q |
108 |
aatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgcccttccttt |
207 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||||||| ||||||| ||||||||||||||||||||||| | ||||||| ||||||| ||| |||| |
|
|
| T |
39427504 |
aatgttatccttgacttgacgaagttctgtttcttttgttctgagttcctgcttgcgctctccaatcaagtcattcatcaaacagagctgtgctttcttt |
39427603 |
T |
|
| Q |
208 |
gctacaaaatccttgacacattcatcaattttcccctgcattttcttg |
255 |
Q |
| |
|
|| |||||||||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
39427604 |
gcatcaaaatccttgacacattcatcaaattctccctgcaatttcttg |
39427651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 108 - 360
Target Start/End: Original strand, 39199295 - 39199547
Alignment:
| Q |
108 |
aatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgcccttccttt |
207 |
Q |
| |
|
||||||||| ||||||| | |||||| | |||||| ||||||| ||| ||||||| ||||||||||||| |||| |||| |||| ||||||| |||| |
|
|
| T |
39199295 |
aatgttatcaatgacttgattaagttctatctctttcatcttgagctctagcttgcgttctccaatcaagttttccaacaaaaagagttgccctttcttt |
39199394 |
T |
|
| Q |
208 |
gctacaaaatccttgacacattcatcaattttcccctgcattttcttgcaagcttcgttaattcttccaacacaggtaatttcctttttcttattttcaa |
307 |
Q |
| |
|
||||||| || |||| ||| ||||||||||| |||||| || ||||| |||||| | |||||||| |||| ||| || || |||||||||| || |
|
|
| T |
39199395 |
actacaaactcattgatacaatcatcaattttttcctgcacttccttgcgagcttcatcaattcttctaacaacactaacttggttcttcttattttgaa |
39199494 |
T |
|
| Q |
308 |
gctctttggagcgttcctcaatatttctctttattgactgcagtctcttctct |
360 |
Q |
| |
|
|||||||| ||| || ||| ||| ||||||||| ||||||| ||| |||||| |
|
|
| T |
39199495 |
gctctttgcagcactcttcagtatctctctttatggactgcaatcttttctct |
39199547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 108 - 360
Target Start/End: Original strand, 39382026 - 39382278
Alignment:
| Q |
108 |
aatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgcccttccttt |
207 |
Q |
| |
|
||||||||| ||||||| | |||||||| |||||||| |||||| ||| |||||||||||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
39382026 |
aatgttatcaatgacttgattaagttccacctcttttgccttgagctctagcttgcgctctccaatcatgttttccatcaaatagagctgatcttccttc |
39382125 |
T |
|
| Q |
208 |
gctacaaaatccttgacacattcatcaattttcccctgcattttcttgcaagcttcgttaattcttccaacacaggtaatttcctttttcttattttcaa |
307 |
Q |
| |
|
||||||| ||||||| |||||| ||| |||| |||||| ||| | ||| ||| | |||||||| |||| ||| || || |||||||||| || |
|
|
| T |
39382126 |
actacaaactccttgatacattcttcagttttttcctgcactttgtcacaaacttgatcaattcttctaacaacactaacttggttcttcttattttgaa |
39382225 |
T |
|
| Q |
308 |
gctctttggagcgttcctcaatatttctctttattgactgcagtctcttctct |
360 |
Q |
| |
|
|||||||| ||| || ||| ||| ||||||||| ||||| | |||||||||| |
|
|
| T |
39382226 |
gctctttgcagcactcttcagtatctctctttatggactgtaatctcttctct |
39382278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 39458608 - 39458511
Alignment:
| Q |
10 |
gactcaagttccttaatccggctttcaaaatgcttctgtttggataccaaatcattcaccagctcctttacttggctttcaaattccttctgttttga |
107 |
Q |
| |
|
|||||||| ||||| || |||||||| |||||||||||||| |||| |||||||||||| |||||||| | ||| ||||||||||||||| |||||| |
|
|
| T |
39458608 |
gactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctccttcgcctggatttcaaattccttctcttttga |
39458511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 102 - 279
Target Start/End: Complemental strand, 39220427 - 39220250
Alignment:
| Q |
102 |
ttttgaaatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgccct |
201 |
Q |
| |
|
||||||||||||| || |||||| | |||||| | |||||||| |||||| || |||||| |||| |||||||| |||||||||||||||| | || |
|
|
| T |
39220427 |
ttttgaaatgttacccttgacttgatcaagttctatctcttttgccttgagctcaagcttgctctctttaatcaagttttccatcaaatagagctcctct |
39220328 |
T |
|
| Q |
202 |
tcctttgctacaaaatccttgacacattcatcaattttcccctgcattttcttgcaagcttcgttaattcttccaaca |
279 |
Q |
| |
|
|| || ||||||| ||||||| ||| || |||||||| |||||| ||||| |||||| || | |||||||| |||| |
|
|
| T |
39220327 |
tctttcactacaaactccttgatacaatcgtcaattttttcctgcactttctcgcaagcatcatcaattcttctaaca |
39220250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 39415187 - 39415254
Alignment:
| Q |
1 |
ttctctttagactcaagttccttaatccggctttcaaaatgcttctgtttggataccaaatcattcac |
68 |
Q |
| |
|
|||||||| |||||||| ||||| || |||||||||||||| ||| |||| ||||||||||||||||| |
|
|
| T |
39415187 |
ttctcttttgactcaagctccttcattcggctttcaaaatgattcagttttgataccaaatcattcac |
39415254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 366
Target Start/End: Original strand, 27154981 - 27155054
Alignment:
| Q |
293 |
ttttcttattttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctctgcttct |
366 |
Q |
| |
|
||||| ||||| ||||||||||||||| |||||||||| ||||||||| ||||||| ||| | |||| ||||| |
|
|
| T |
27154981 |
ttttcatatttccaagctctttggagcactcctcaatatctctctttatggactgcaatctttcctcttcttct |
27155054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 38792725 - 38792654
Alignment:
| Q |
4 |
tctttagactcaagttccttaatccggctttcaaaatgcttctgtttggataccaaatcattcaccagctcc |
75 |
Q |
| |
|
||||| |||||||| ||||| || ||| |||| ||| |||||||||| |||| |||||||||||||||||| |
|
|
| T |
38792725 |
tctttcgactcaaggtccttcattcggttttcgaaaagcttctgtttcaatacaaaatcattcaccagctcc |
38792654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39390634 - 39390695
Alignment:
| Q |
1 |
ttctctttagactcaagttccttaatccggctttcaaaatgcttctgtttggataccaaatc |
62 |
Q |
| |
|
|||||||| ||||||| ||||| || |||||||||||||||||||||| |||| |||||| |
|
|
| T |
39390634 |
ttctcttttgactcaaactccttcatttggctttcaaaatgcttctgttttgatagcaaatc |
39390695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 2 - 360
Target Start/End: Complemental strand, 19807007 - 19806649
Alignment:
| Q |
2 |
tctctttagactcaagttccttaatccggctttcaaaatgcttctgtttggataccaaatcattcaccagctcctttacttggctttcaaattccttctg |
101 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||| || |||||||| |||||||| || |
|
|
| T |
19807007 |
tctctttcgactcaagctccttaatatggctttcgaaatgcttctgttttgataccaaatcattcatcagctccttcacgtggctttccaattccttttg |
19806908 |
T |
|
| Q |
102 |
ttttgaaatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgccct |
201 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19806907 |
ttttgaaatgttatccatgacttgatgaagttccaactcttttgtctttagttctttcttgcgctctccaatcaagtcctccatcaaacggagctgccct |
19806808 |
T |
|
| Q |
202 |
tcctttgctacaaaatccttgacacattcatcaattttcccctgcattttcttgcaagcttcgttaattcttccaacacaggtaatttcctttttcttat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||| | | ||| ||||||||||||||||| ||||| ||||||||| |||||| | |||||||||||||||||| |
|
|
| T |
19806807 |
tcctttgctacaaaatccttgacacatttgttagtttccccctgcattttcttgcgagctttgttaattctcccaacataactaatttcctttttcttat |
19806708 |
T |
|
| Q |
302 |
tttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctct |
360 |
Q |
| |
|
||||||| |||| | ||| |||||||||| ||||||||| ||||||| |||| ||||| |
|
|
| T |
19806707 |
tttcaagatcttcgcagcaatcctcaatatctctctttatggactgcaatctcctctct |
19806649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 84 - 222
Target Start/End: Complemental strand, 17059124 - 17058986
Alignment:
| Q |
84 |
gctttcaaattccttctgttttgaaatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctcc |
183 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17059124 |
gctttcaaaatgcttctgttttgaaatgttatccatgacttgacgaagttctctctcttttgtcacgagttcttgcttgcgctctccaatcaagtcctcc |
17059025 |
T |
|
| Q |
184 |
atcaaatagagctgcccttcctttgctacaaaatccttg |
222 |
Q |
| |
|
|| | | |||| | |||||||||||||| ||| |||||| |
|
|
| T |
17059024 |
atgagagagagtttcccttcctttgctaaaaattccttg |
17058986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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