View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12537_low_5 (Length: 250)
Name: NF12537_low_5
Description: NF12537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12537_low_5 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 5315699 - 5315458
Alignment:
| Q |
1 |
tctcttatgcaacattattacctggggacacatatccacgaggaacaagaattagcaacaaagctgcggtgatgagagttaaattttgaagtgcttcaat |
100 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5315699 |
tctcttatgcaacattattacctggcgacacgtatccacgaggaacaagaattagcaacaaagctgcggtgatgatagttaaattttgaagtgcttcaat |
5315600 |
T |
|
| Q |
101 |
ccttataaccatccattccattcccacattagaatgaaagaacaatgaagcatctttgtccacaagttttaagtagtttttgtaaaatccatctaccatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5315599 |
ccttataaccatccattccattcccacattagaatgaaagaacaatgaagcatctttgtccacaagttttaagtagtttttgtaaaatccatctaccatg |
5315500 |
T |
|
| Q |
201 |
ttgaatgctcttacagtaaccactccaagtgatgtctctgct |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
5315499 |
ttgaatgctcttacagtaaccactccaagtgatgtctctgct |
5315458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 5308709 - 5308485
Alignment:
| Q |
14 |
attattacctggggacacatatccacgaggaacaagaattagcaacaaagctgcggtgatgagagttaaattttgaagtgcttcaatccttataaccatc |
113 |
Q |
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|||| ||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||| ||||| |||||||| |||||||||||||| ||||| | |
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| T |
5308709 |
attactacctggggacacatatccacaaggaagtagaataagcaacaaagctgcagtgatgacagttatattttgaattgcttcaatccttaaaaccacc |
5308610 |
T |
|
| Q |
114 |
cattccattcccacattagaatgaaagaacaatgaagcatctttgtccacaagttttaagtagtttttgtaaaatccatctaccatgttgaatgctctta |
213 |
Q |
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| T |
5308609 |
cattccatggccacattagaatgaaagaacaatgaagcatctgagtccacaagttttaagtaatttttgtaaaatctatctaccatgttgaatgctctta |
5308510 |
T |
|
| Q |
214 |
cagtaaccactccaagtgatgtctc |
238 |
Q |
| |
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||||||||||||| |||||||||| |
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| T |
5308509 |
tagtaaccactccatgtgatgtctc |
5308485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 5280640 - 5280864
Alignment:
| Q |
14 |
attattacctggggacacatatccacgaggaacaagaattagcaacaaagctgcggtgatgagagttaaattttgaagtgcttcaatccttataaccatc |
113 |
Q |
| |
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|||||||||||| || |||||||| ||||| ||||| |||||||||||||| ||||||| ||| || |||||||||||||||||||||| ||||||| |
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| T |
5280640 |
attattacctggtgatacatatccctgaggatgtagaataagcaacaaagctgctgtgatgacagtcaagttttgaagtgcttcaatccttaaaaccatc |
5280739 |
T |
|
| Q |
114 |
cattccattcccacattagaatgaaagaacaatgaagcatctttgtccacaagttttaagtagtttttgtaaaatccatctaccatgttgaatgctctta |
213 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
5280740 |
cattgcatcgccacattagaatgaaagaacaatgaagcatctgtgtccacaagttttaagtagtttttgaaaaatctgtctaccatgttgaatgctctta |
5280839 |
T |
|
| Q |
214 |
cagtaaccactccaagtgatgtctc |
238 |
Q |
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| T |
5280840 |
cagtaaccactccaagtgatgtctc |
5280864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 5288653 - 5288877
Alignment:
| Q |
14 |
attattacctggggacacatatccacgaggaacaagaattagcaacaaagctgcggtgatgagagttaaattttgaagtgcttcaatccttataaccatc |
113 |
Q |
| |
|
||||||||||||||| |||||||| |||||| ||||| ||||| | |||||| ||||||| ||| || |||||||||||||||||||||| ||||| | |
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| T |
5288653 |
attattacctggggatacatatccctgaggaagtagaataagcaaaagagctgcagtgatgacagtcaagttttgaagtgcttcaatccttaaaaccacc |
5288752 |
T |
|
| Q |
114 |
cattccattcccacattagaatgaaagaacaatgaagcatctttgtccacaagttttaagtagtttttgtaaaatccatctaccatgttgaatgctctta |
213 |
Q |
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|||||||| || |||| |||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||| |||||||||||||||| ||||| |
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| T |
5288753 |
cattccatggccccatttgaatgaaagaacaatgaagcatctgtgtccacaagtttcaagtagtttttgaaaaatctgtctaccatgttgaatgatctta |
5288852 |
T |
|
| Q |
214 |
cagtaaccactccaagtgatgtctc |
238 |
Q |
| |
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| T |
5288853 |
ctgtaactactccaagtgatgtctc |
5288877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 14947878 - 14948100
Alignment:
| Q |
16 |
tattacctggggacacatatccacgaggaacaagaattagcaacaaagctgcggtgatgagagttaaattttgaagtgcttcaatccttataaccatcca |
115 |
Q |
| |
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|||||||||| || |||||||| ||||||| ||||| | || ||||||||| ||||||| ||| || |||||||||||||||| ||||| ||| | ||| |
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| T |
14947878 |
tattacctggcgatacatatccccgaggaagtagaataatcagcaaagctgcagtgatgacagtcaagttttgaagtgcttcaacccttacaactaccca |
14947977 |
T |
|
| Q |
116 |
ttccattcccacattagaatgaaagaacaatgaagcatctttgtccacaagttttaagtagtttttgtaaaatccatctaccatgttgaatgctcttaca |
215 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| |||||||||||| |
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| T |
14947978 |
ttccattgccacattagaatgaaagaacaatgaagcatctgtgtccacaagttttaagtagtttttgaaaaatctgtctaccatgccaaatgctcttaca |
14948077 |
T |
|
| Q |
216 |
gtaaccactccaagtgatgtctc |
238 |
Q |
| |
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||||| |||||||| |||||||| |
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| T |
14948078 |
gtaactactccaagcgatgtctc |
14948100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 15127472 - 15127251
Alignment:
| Q |
17 |
attacctggggacacatatccacgaggaacaagaattagcaacaaagctgcggtgatgagagttaaattttgaagtgcttcaatccttataaccatccat |
116 |
Q |
| |
|
|||||||||||| | ||||| |||||| ||||| || | ||||||||| ||||||| ||| |||||| |||||||||||||||||| ||| | |||| |
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| T |
15127472 |
attacctggggatagatatctttgaggaagtagaatgagtagcaaagctgcagtgatgacagtcaaatttagaagtgcttcaatccttaaaactaaccat |
15127373 |
T |
|
| Q |
117 |
tccattcccacattagaatgaaagaacaatgaagcatctttgtccacaagttttaagtagtttttgtaaaatccatctaccatgttgaatgctcttacag |
216 |
Q |
| |
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|||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| | |
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|
| T |
15127372 |
tccattgccacattggaatgaaagaacaatgaagcatctgtatccacaagttttaagtagtttttgaaaaatctgtctaccatgttgaatgctcgtacgg |
15127273 |
T |
|
| Q |
217 |
taaccactccaagtgatgtctc |
238 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
15127272 |
taaccactccaagtgatgtctc |
15127251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 31524751 - 31524971
Alignment:
| Q |
19 |
tacctggggacacatatccacgaggaacaagaattagcaacaaagctgcggtgatgagagttaaattttgaagtgcttcaatccttataaccatccattc |
118 |
Q |
| |
|
||||||| |||||||||||| |||||| ||||| |||||||| ||||| ||||| | || ||| |||||||||| |||||||||||||||||||| || |
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| T |
31524751 |
tacctggagacacatatccatgaggaagtagaataagcaacaatgctgcagtgataactgtcaaagtttgaagtgcctcaatccttataaccatccactc |
31524850 |
T |
|
| Q |
119 |
cattcccacattagaatgaaagaacaatgaagcatctttgtccacaagttttaa-gtagtttttgtaaaatccatctaccatgttgaatgctcttacagt |
217 |
Q |
| |
|
||| | ||||||||||||||||||| | ||||||| |||| ||||||||||| ||||| ||| || || |||||||||||||||||||||| ||| |
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| T |
31524851 |
catggcaacattagaatgaaagaacagcgtagcatctgtgtcgacaagttttaaagtagtatttcataagtctgtctaccatgttgaatgctcttatagt |
31524950 |
T |
|
| Q |
218 |
aaccactccaagtgatgtctc |
238 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
31524951 |
aaccactccaagtgatgtctc |
31524971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 114019 - 113952
Alignment:
| Q |
113 |
ccattccattcccacattagaatgaaagaacaatgaagcatctttgtccacaagttttaagtagtttt |
180 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
114019 |
ccattccattgccacattagaatgaaagaacaatgaagcatctgtgtccacaagttttaagtagtttt |
113952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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