View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12537_low_6 (Length: 247)
Name: NF12537_low_6
Description: NF12537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12537_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 5315738 - 5315967
Alignment:
| Q |
1 |
ctcggcaattctcctgttctttgtctccaggacttgtgggactgtctctttattatgctttaattttgacatcagcccaaatattttggactcgatggtt |
100 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5315738 |
ctcggcaattctcctgttct--gtctccaggacttgtgggactgtctctttattatgctttaattttgacatcagccccaatattttggactcgatggtt |
5315835 |
T |
|
| Q |
101 |
ttccaacttatcgaactacattatctctgttgaaagaatcaatcagttcattcacattccatttgagcctcctgccattgtggagaataatcgaccccct |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5315836 |
ttccaacttatcgaactacattatctctgttgaaagaatcaatcagttcattcacgttccatttgagcctcctgccattgtggaggataatcgaccccct |
5315935 |
T |
|
| Q |
201 |
tcttcatggccttccaagggtaggattgatgt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
5315936 |
tcttcatggccttccaagggtaggattgatgt |
5315967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 5309054 - 5309246
Alignment:
| Q |
28 |
caggacttgtgggactgtctctttattatgctttaattttgacatcagcccaaatattttggactcgatggttttccaacttatcgaactacattatctc |
127 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
5309054 |
caggccttgtgggactgtctctttcttatgcttttaccttgacaggagcccaaatattttggactcgatggttttccaacttatcaaactatattatctc |
5309153 |
T |
|
| Q |
128 |
tgttgaaagaatcaatcagttcattcacattccatttgagcctcctgccattgtggagaataatcgacccccttcttcatggccttccaaggg |
220 |
Q |
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||| ||||||||||| || ||||||||||| ||| | ||||||| |||||||||| ||||||||||| || |||||||||||||| ||||| |
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| T |
5309154 |
tgtcgaaagaatcaaccaattcattcacataccagctaagcctccctccattgtggataataatcgacctccatcttcatggccttctaaggg |
5309246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 28 - 230
Target Start/End: Complemental strand, 5288178 - 5287976
Alignment:
| Q |
28 |
caggacttgtgggactgtctctttattatgctttaattttgacatcagcccaaatattttggactcgatggttttccaacttatcgaactacattatctc |
127 |
Q |
| |
|
|||| |||||||| |||||||||| ||||||||| | ||||||| ||||||||||||||||| | ||||||||||||||||||| ||| | |||||||| |
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|
| T |
5288178 |
caggccttgtggggctgtctctttcttatgcttttactttgacaggagcccaaatattttggagtagatggttttccaacttatcaaaccatattatctc |
5288079 |
T |
|
| Q |
128 |
tgttgaaagaatcaatcagttcattcacattccatttgagcctcctgccattgtggagaataatcgacccccttcttcatggccttccaagggtaggatt |
227 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||| ||| || |||||||||||||| ||||| ||||| || |||||||||||||||||||| | |||| |
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| T |
5288078 |
cgttgaaagaatcaaccaattcattcacataccagctgaaccgcctgccattgtggataataaccgaccaccatcttcatggccttccaagggcaagatt |
5287979 |
T |
|
| Q |
228 |
gat |
230 |
Q |
| |
|
||| |
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|
| T |
5287978 |
gat |
5287976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 230
Target Start/End: Complemental strand, 14947433 - 14947208
Alignment:
| Q |
4 |
ggcaattctcctgttctttgtctccaggacttgtgggactgtctctttattatgctttaattttgacatcagcccaaatattttggactcgatggttttc |
103 |
Q |
| |
|
||||| ||||||||||| ||| | |||| ||||| ||||||||||||| ||||||||| | |||||| ||||||||||||||||||| |||||||||| |
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|
| T |
14947433 |
ggcaactctcctgttctgtgt-tgcaggccttgttggactgtctctttcttatgcttttaccttgacaggagcccaaatattttggactagatggttttc |
14947335 |
T |
|
| Q |
104 |
caacttatcgaactacattatctctgttgaaagaatcaatcagttcattcacattccatttgagcctcctgccattgtggagaataatcgacccccttct |
203 |
Q |
| |
|
|| ||||| ||| | ||||||||||||||||||||||| || |||||| |||| ||| ||||||||||||| ||||||| |||| ||||| || ||| |
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|
| T |
14947334 |
aaatttatcaaaccatattatctctgttgaaagaatcaaacaattcattaacataccagctgagcctcctgccgttgtggatcataaccgacctccatct |
14947235 |
T |
|
| Q |
204 |
tcatggccttccaagggtaggattgat |
230 |
Q |
| |
|
||||||||||||||||| | ||||||| |
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|
| T |
14947234 |
tcatggccttccaagggcaagattgat |
14947208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 15127672 - 15127828
Alignment:
| Q |
74 |
agcccaaatattttggactcgatggttttccaacttatcgaactacattatctctgttgaaagaatcaatcagttcattcacattccatttgagcctcct |
173 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| || || || |||||||||||||||||||| || ||||||||||| ||| |||||||||| |
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| T |
15127672 |
agcccaaatattttggactagatggttttccaacttatcaaattatatcatctctgttgaaagaatcaagcaattcattcacataccagctgagcctcct |
15127771 |
T |
|
| Q |
174 |
gccattgtggagaataatcgacccccttcttcatggccttccaagggtaggattgat |
230 |
Q |
| |
|
||||||||||| ||||| || || || |||||||||||||||||||| | ||||||| |
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|
| T |
15127772 |
gccattgtggataataaccggccgccatcttcatggccttccaagggcaagattgat |
15127828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 5280451 - 5280244
Alignment:
| Q |
28 |
caggacttgtgggactgtctctttattatgctttaattttgacatcagcccaaatattttggactcgatggttttccaacttatcgaactacattatctc |
127 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||||||||| |||||| || ||||| |||||||| |
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|
| T |
5280451 |
caggccttgtgggactgtctctttcttatgctttttccttgacaggagcccaagtattttggactcgatggtttaacaacttgtcaaactatattatctc |
5280352 |
T |
|
| Q |
128 |
tgttgaaagaatcaatcagttcattcacattccatttgagcctcctgccattgtggagaataatcgacccccttcttcatggccttccaagggtaggatt |
227 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||| ||||||||| ||||||||||| ||||| ||||| || | ||| |||||||||||||| | |||| |
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|
| T |
5280351 |
cgttgaaagaatcaagcaattcattcacataccagctgagcctcccgccattgtggataataaccgacctccatattcgtggccttccaagggcaagatt |
5280252 |
T |
|
| Q |
228 |
gatgtcca |
235 |
Q |
| |
|
||| |||| |
|
|
| T |
5280251 |
gatctcca |
5280244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 31524674 - 31524452
Alignment:
| Q |
7 |
aattctcctgttctttgtctccaggacttgtgggactgtctctttattatgctttaattttgacatcagcccaaatattttggactcgatggttttccaa |
106 |
Q |
| |
|
|||||| ||||| | ||| | |||||||||||||||||||||||| |||||||| | ||||||| |||||| |||||||||||| |||||||||||| |
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|
| T |
31524674 |
aattcttctgttgtgtgtgtgcaggacttgtgggactgtctctttcgtatgcttttaatttgacaggagcccagatattttggactagatggttttccac |
31524575 |
T |
|
| Q |
107 |
cttatcgaactacattatctctgttgaaagaatcaatcagttcattcacattccatttgagcctcctgccattgtggagaataatcgacccccttcttca |
206 |
Q |
| |
|
|||||| ||| |||| ||||| |||||||||||||| |||||||| |||||||| || |||||||||||| ||||| |||| ||||| || ||| || |
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|
| T |
31524574 |
cttatcaaacaacataatctcggttgaaagaatcaagcagttcatcgacattccagccgaacctcctgccattatggaggataaccgaccgccatctcca |
31524475 |
T |
|
| Q |
207 |
tggccttccaagggtaggattga |
229 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31524474 |
tggccttccaagggtaggattga |
31524452 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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