View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12538_high_13 (Length: 344)
Name: NF12538_high_13
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12538_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 32678593 - 32678470
Alignment:
| Q |
123 |
gtttttatagtctatgcttggcgaacaatattcattttcattcaatatgatagttaatatttctatttgaatctatggctcgagaatgtctaaccaccac |
222 |
Q |
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| T |
32678593 |
gtttttatagtctatgcttggcgaacaatagtcattttcattcaatataatagttaat-tttctatttgaatctatggctcgagaatgtctaaccaccac |
32678495 |
T |
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| Q |
223 |
atgaaatatacatgcagactcatcc |
247 |
Q |
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| T |
32678494 |
atgaaatatacatgcagactcatcc |
32678470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 12251644 - 12251709
Alignment:
| Q |
154 |
tcattttcattcaatatgatagttaatatttctatttgaatctatggctcgagaatgtctaaccac |
219 |
Q |
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| T |
12251644 |
tcatgttcattcaatataattgttactatttctatttgaatctatggatggagaatgtctatccac |
12251709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 40180061 - 40180149
Alignment:
| Q |
29 |
aatcacattgaaagctagttctgaaggacacggtggcggagtctctgcaatcattttaaagatcaac-gcttggctgcataaaaatctt |
116 |
Q |
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| T |
40180061 |
aatcacattgaaaacttcttttgaaggacgctgtagcggaccgtctgcaatcattttaaagatcaactgcttggctgcatcaaaatctt |
40180149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 8525513 - 8525550
Alignment:
| Q |
175 |
gttaatatttctatttgaatctatggctcgagaatgtc |
212 |
Q |
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| T |
8525513 |
gttaatatttctattggaatctatggctcgagaatgtc |
8525550 |
T |
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