View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12538_high_15 (Length: 339)
Name: NF12538_high_15
Description: NF12538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12538_high_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 64 - 339
Target Start/End: Original strand, 3285952 - 3286227
Alignment:
| Q |
64 |
atgatcatctctttgtacatttagtggggcccctattggactccaaccattctcaacaacatgctcctctgttcctagtaccattaccatcactgttcct |
163 |
Q |
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| T |
3285952 |
atgatcatctctttgtacatttagtggggcccctattggactccaaccattctcaacaacatgctcctctgttccgagtaccattaccatcactgttcct |
3286051 |
T |
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| Q |
164 |
ttgctcttttttcaccttttccagttttacccttcttctcttaccataataattatgattctcttcactcttcagtgttcacctttgatatcgatcacaa |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3286052 |
ttgctcttttttcaccttttccagttttacccttcttctcttaccataataattatgattctcttcactcttcagtgttcacctttgatatcaatcacaa |
3286151 |
T |
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| Q |
264 |
ttaacactgcaataacaccaccttcttgttcttcttcttgatcttctagttcacagaacagagcaactctgtttca |
339 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3286152 |
ttaacactgcaataataccaccttcttgttcttcttcttgatcttctagttcacagaacagagcaactctgtttca |
3286227 |
T |
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